View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16073_high_23 (Length: 207)
Name: NF16073_high_23
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_high_23 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0022 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 25143203 - 25143016
Alignment:
| Q |
20 |
atgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggtagatgctttagttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
25143203 |
atgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagagagggttttatgggtagatgctttagttt |
25143104 |
T |
|
| Q |
120 |
ttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaagtggtggtttttggtg |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25143103 |
ttcagccgctgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttgaatgtaaagtggtggtttttggtg |
25143016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 31039300 - 31039118
Alignment:
| Q |
20 |
atgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggtagatgctttagttt |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31039300 |
atgatgatgagcatgggg-cagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggtagatgctttagttt |
31039202 |
T |
|
| Q |
120 |
ttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaagtggtggttttt |
203 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31039201 |
ttcagccgctgtttggattttcttgtaaaataatgtggtttactgttgttgggtttggagtttgaatgtaaagtggtggttttt |
31039118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 207
Target Start/End: Original strand, 28164666 - 28164852
Alignment:
| Q |
20 |
atgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggtagatgctttagttt |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28164666 |
atgatgatgagcatgggg-cagttttcgttttttgtagaaggagggttattggttggtgatgctagagagggagggttttatgggtagatgctttagttt |
28164764 |
T |
|
| Q |
120 |
ttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaagtggtggtttttggtg |
207 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28164765 |
ttcagccgctgtttggattttcttgtaaaataatgtggtttgctgttgttgggtttggagtttgaatgtaaagtggtggtttttggtg |
28164852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 27262306 - 27262184
Alignment:
| Q |
20 |
atgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagag-ttttatgggtagatgctttagtt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||||| |
|
|
| T |
27262306 |
atgatgatgagcatgggg-cagttttcgttttt-gtagaaggagggttattggttagtgatgttggagagggagggtttttatgggtagattctttagtt |
27262209 |
T |
|
| Q |
119 |
tttcagccattgtttgaattttctt |
143 |
Q |
| |
|
||||||| |||||| |||||||| |
|
|
| T |
27262208 |
tttcagctgctgtttggattttctt |
27262184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 67272 - 67335
Alignment:
| Q |
144 |
gtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaagtggtggtttttggtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
67272 |
gtaaaataatgtggtttgttgttgttgggtcgggagtttgaatgtaaagtggtggtttttggtg |
67335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 32747591 - 32747654
Alignment:
| Q |
144 |
gtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaagtggtggtttttggtg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
|
|
| T |
32747591 |
gtaaaataatgtggtttgttgttgttgggtcgggagtttgaatgtaaagcggtggtttttggtg |
32747654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University