View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16073_high_3 (Length: 424)
Name: NF16073_high_3
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 31031419 - 31031114
Alignment:
| Q |
16 |
aagaaatgatagaagttattttttgtgtgttaactacaaccaataatatgagaaaacatagctccaatcaaatgcacaaataagggcagcacaggaaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31031419 |
aagaaatgatagaagttattttt-gtgtgttaactacaaccaataatatgagaaaacatagctccaatcaaatgcacaaataagggcagcacaggaaaaa |
31031321 |
T |
|
| Q |
116 |
agtgatgaaatagtattataatataaagaagataaaaattggaagcatctggctcttcttatgacgaaaatgaagcaccgataataagaagtgaattaaa |
215 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31031320 |
ag--atgaaataatattataatataaagaagataaaaattggaagcatctggctcttcttatgacgaaaatgaagcaccgataataagaagtgaattaaa |
31031223 |
T |
|
| Q |
216 |
taaaaattaaacatttaagtaaactgtcttgtaaaaactttaaggggtaagaagataagataatatccccaagttatgttacatcatgcttaaggggcga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
31031222 |
taaaaattaaacatttaagtaaactgtcttgtaaaaactttaaggggtaagaagataagataatagccccaagttatattacatcatgcttaaggggcga |
31031123 |
T |
|
| Q |
316 |
gtactcctt |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
31031122 |
gtactcctt |
31031114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University