View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_high_5 (Length: 393)
Name: NF16073_high_5
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 21 - 384
Target Start/End: Original strand, 13204080 - 13204438
Alignment:
| Q |
21 |
tgtcctgtcggacgggacatacttaattcaagttaagtagtgtccatgcttcaaacaacatagaagcatatactattgcatgcaagttatgtatagaata |
120 |
Q |
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| T |
13204080 |
tgtcgtgtcggacaggacatacttaattcaagt-----agtgtccatggttcaaacaacatagaagcatatactattgcatgcaagttatgtatagaata |
13204174 |
T |
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| Q |
121 |
gtagtaaatatagaaaataaggcttaccatcaatggcagtgaaataagcctcacgagagacagcttgaacagcaccaattccagcagctttgacaaaact |
220 |
Q |
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| T |
13204175 |
gtagtaaatatagaaaataaggcttaccatcaatggcagtgaaataagcctcacgagagacagcttgaacagcaccaattccagcagctttgacaaaact |
13204274 |
T |
|
| Q |
221 |
ctcagcaatgcggttaagaagagggtggccaaggtcaaacagacctttcctatcaaagctacatatctcatcaagtagagccctagtctctacctcactg |
320 |
Q |
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| T |
13204275 |
ctcagcaatgcggttaagaagagggtggccaaggtcaaacagacctttcctatcaaagctacatatctcatcaagtagagcccttgtctctacctcactg |
13204374 |
T |
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| Q |
321 |
ctcgtcttcaagttcatctttgattatttactccaaatgcaattcaattcttctttttgatgat |
384 |
Q |
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| T |
13204375 |
ctcgtcttcaagttcatctttgattatttactccaaatgcaattcaattcttctttttgatgat |
13204438 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 50324807 - 50324756
Alignment:
| Q |
201 |
ccagcagctttgacaaaactctcagcaatgcggttaagaagagggtggccaa |
252 |
Q |
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| T |
50324807 |
ccagcagctttaacaaaactctcagcaatgcggttaacaagagggtgaccaa |
50324756 |
T |
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