View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16073_low_13 (Length: 326)
Name: NF16073_low_13
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 32541298 - 32541179
Alignment:
| Q |
21 |
aacctggtgtttgaaaagagtttcgttgagaagttcatctagagtccaagagaatacaacacctattaagcttgcatgatgaagacattcctccattgta |
120 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || |
|
|
| T |
32541298 |
aacctggtatttgaaaagagtttcgttgagaagatcatctagagtccaagagaatacaacacttattaagcttgcacggtgaagacattcctccatttta |
32541199 |
T |
|
| Q |
121 |
ttattgcatcttttctccat |
140 |
Q |
| |
|
||| ||||||| |||||||| |
|
|
| T |
32541198 |
ttactgcatctcttctccat |
32541179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 32516948 - 32517048
Alignment:
| Q |
18 |
aagaacctggtgtttgaaaagagtttcgttgagaagttcatctagagtccaagagaatacaacacctattaagcttgcatgatgaagacattcctccatt |
117 |
Q |
| |
|
||||||||||| |||||||||| |||| ||||||| || |||||||||||||||||||||| | ||||||||||| || |||||||||||| ||||||| |
|
|
| T |
32516948 |
aagaacctggtatttgaaaagattttcattgagaatatcctctagagtccaagagaatacaatatctattaagcttccacgatgaagacatttctccatt |
32517047 |
T |
|
| Q |
118 |
g |
118 |
Q |
| |
|
| |
|
|
| T |
32517048 |
g |
32517048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 32541098 - 32541062
Alignment:
| Q |
277 |
ttgttcaaaaactaaagcacatttacatatccataat |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
32541098 |
ttgttcaaaagctaaagcacatttacatgtccataat |
32541062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University