View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_14 (Length: 307)
Name: NF16073_low_14
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 20522177 - 20521885
Alignment:
| Q |
1 |
acatattggatttccatggcacacaattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatg |
100 |
Q |
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| T |
20522177 |
acatattggatttccatggcacacaattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatg |
20522078 |
T |
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| Q |
101 |
gaaaagctttagaatttaactttgttgctccttctaattggcaatttggacaaacctatgaaagttctttaaatttttaaatgtgtt----gaatttagt |
196 |
Q |
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| T |
20522077 |
gaaaagctttagagtttaattttgttgctccttctaattggcaatttggacaaacctatgaaggttctttaaatttttaaatgtgttgaatgaatttagt |
20521978 |
T |
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| Q |
197 |
ttagtttaagatttacaaatacatagttatacgcattatgagtatcatgtaattgtgttttgggactaaaagtcccaaatcttgtttcatttt |
289 |
Q |
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| T |
20521977 |
ttagtttaagatttacaaatacatagttatacgcattatgagtatcatgtaattgtgttttaggactaaaagtcccaaaccttgtttcatttt |
20521885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 22732815 - 22732676
Alignment:
| Q |
25 |
aattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatggaaaagctttagaatttaactttg |
124 |
Q |
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| T |
22732815 |
aattggggacaagtttggcatacgggagttaatttggtaggacaaaatttgtcattttgggttacgacaactgatcgaaaagctttactgttcacttccg |
22732716 |
T |
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| Q |
125 |
ttgctccttctaattggcaatttggacaaacctatgaaag |
164 |
Q |
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| T |
22732715 |
ttactccttccaattggcaatttggacaaacctacgaaag |
22732676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 3739761 - 3739915
Alignment:
| Q |
7 |
tggatttccatggcacacaattggggacaattttgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatggaaaag |
106 |
Q |
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|||||| ||||| ||||||||||||| ||| |||| |||||||| |||||||||| || |||| ||||||||| ||||||||||| | |||||| |
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| T |
3739761 |
tggattcccatgtcacacaattgggggcaaaattggaatactggaatgaatttggtaggacaagccttatcattccaagttactacaagtggcggaaaaa |
3739860 |
T |
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| Q |
107 |
ctttagaatttaactttgttgctccttctaattggcaatttggacaaacctatga |
161 |
Q |
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| T |
3739861 |
ctttagagttagattcagttgctccttcgaattggcaatttgggcagacctatga |
3739915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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