View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_18 (Length: 270)
Name: NF16073_low_18
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 7695211 - 7695433
Alignment:
| Q |
15 |
acttgatgattgcataaatcaattaaaccatataataaattctttctttttacttagcatgcactcgcctgatatactttgttaactgatttaacaaaat |
114 |
Q |
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| T |
7695211 |
acttgatgattgcataaatcaattaaaccatataataaattctt-ctttttacttagcatgcactcgcccgatatactttgttaactgatttaacaaaat |
7695309 |
T |
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| Q |
115 |
tgaacatgagccagtggcagaagaattgaacttcacttgtggcgggatatttcatcacgtgcataataaggaaatggagagtaataaatgtaatagcttg |
214 |
Q |
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| T |
7695310 |
tgaacatg-------tgcagaagaattgaacttcacttgtggggggatatttcatcacgtgcataataaggaaatagagagtggtaaatgtaatagcttg |
7695402 |
T |
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| Q |
215 |
catagcaag---taaacttgttagttggtta |
242 |
Q |
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| T |
7695403 |
catagcaagtaataaacttgttagttagtta |
7695433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 16834798 - 16834862
Alignment:
| Q |
162 |
tatttcatcacgtgcataataaggaaatggagagtaataaatgtaatagcttgcatagcaagtaa |
226 |
Q |
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| T |
16834798 |
tattgcatcacgtgcataataaggagaaagagagtagtaaaagtaatagcttgcatagcaagtaa |
16834862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 8402880 - 8402793
Alignment:
| Q |
15 |
acttgatgattgcataaatcaattaaaccatataataaattctttctttttacttagcatgcactcgcctgatatactttgttaactg |
102 |
Q |
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| T |
8402880 |
acttgaagactgcataaatcaattaaaccatattagaaatctcttctttttacttagcatccactcacctgatacacattgttaactg |
8402793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 22498825 - 22498761
Alignment:
| Q |
162 |
tatttcatcacgtgcataataaggaaatggagagtaataaatgtaatagcttgcatagcaagtaa |
226 |
Q |
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|||| |||||| | ||||||||| ||| ||||||| |||||||||||||||||||||||||||| |
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| T |
22498825 |
tattgcatcacatacataataagaaaaaagagagtagtaaatgtaatagcttgcatagcaagtaa |
22498761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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