View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_2 (Length: 437)
Name: NF16073_low_2
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 169 - 419
Target Start/End: Complemental strand, 48695176 - 48694923
Alignment:
| Q |
169 |
atgttgatgattcta---cttctactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
265 |
Q |
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| T |
48695176 |
atgttgatgattctatgtctactactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
48695077 |
T |
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| Q |
266 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48695076 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
48694977 |
T |
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| Q |
366 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagt |
419 |
Q |
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| T |
48694976 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagt |
48694923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 48695339 - 48695200
Alignment:
| Q |
15 |
tcatcatcagctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaag---aagaggtta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48695339 |
tcatcatcagctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaagaagaagaggtta |
48695240 |
T |
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| Q |
112 |
tttggttgtggttgccccaaatcaagacatttgtgggaaa |
151 |
Q |
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| T |
48695239 |
tttggttgtggttgccccaaatcaagacatttgtgggaaa |
48695200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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