View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_20 (Length: 252)
Name: NF16073_low_20
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 45195869 - 45196125
Alignment:
| Q |
1 |
atgacattatataccagtgtcttggtttgacctttagttcaatcctcataataaaatgaatt-------tattttcattgatcggacatgaaaggaagag |
93 |
Q |
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| T |
45195869 |
atgacattatatactagtgccttggtttgacctttagttcaatcctcataataaaatgaattatgagtttattttcattgatcggacttgaaaggaagag |
45195968 |
T |
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| Q |
94 |
ttaggatcctcctcatttcttagnnnnnnnnnnnnnnnnnncttcattactttagttttgtatgtataaatcacgtaagtgcttaataaatatcatatat |
193 |
Q |
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| T |
45195969 |
ttaggatcctcctcatttcttagaaaaagaaaaaaaaat--cttcattactttagttttgtatgtataaatcacataaatgcttaataaatatcatatat |
45196066 |
T |
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| Q |
194 |
tttgaaaaagagaagtgctatatctcgcgaacaaaatcgtcctgagaattccacgaatt |
252 |
Q |
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| T |
45196067 |
tttgaaaaagagaagtgatatacctcgcgaacaaaatcgttccgagaattccacgaatt |
45196125 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 8227881 - 8227939
Alignment:
| Q |
138 |
cattactttagttttgtatgtataaatc-acgtaagtgcttaataaatatcatatattt |
195 |
Q |
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| T |
8227881 |
cattactatagttttgtgtgtataaatcaacataaatgcttaataaatatcaaatattt |
8227939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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