View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_21 (Length: 250)
Name: NF16073_low_21
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 20372837 - 20373048
Alignment:
| Q |
20 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaattgttgcaagaggt |
119 |
Q |
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| T |
20372837 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaatcgttgcaagaggt |
20372936 |
T |
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| Q |
120 |
tcaccattgtttttgtgatgcagacgaagcccagttgtcgagaattctttcttctgtttaatgaaaatctatgtggcaaactgattttgttttctcttac |
219 |
Q |
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| T |
20372937 |
tcaccattgtttctgtgatgcagacg-agcccggttgtcgagaatactttcttctgtttaataaaattctatgtggcaaactgattttgttttctcttac |
20373035 |
T |
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| Q |
220 |
tcagagtcattat |
232 |
Q |
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| T |
20373036 |
tcagagttattat |
20373048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 20433301 - 20433178
Alignment:
| Q |
20 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaattgttgcaagaggt |
119 |
Q |
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| T |
20433301 |
atgacaattgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattga-ctaattgaccacgcccatagaaaatcccttcaagagct |
20433203 |
T |
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| Q |
120 |
tcaccattgtttttgtgatgcagac |
144 |
Q |
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| T |
20433202 |
tcaccaatgtttttgtgacgcagac |
20433178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 20439774 - 20439651
Alignment:
| Q |
20 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaattgttgcaagaggt |
119 |
Q |
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| T |
20439774 |
atgacaattgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattga-ctaattgaccacgcccatagaaaatcccttcaagagct |
20439676 |
T |
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| Q |
120 |
tcaccattgtttttgtgatgcagac |
144 |
Q |
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|||||| ||||||||||| |||||| |
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| T |
20439675 |
tcaccaatgtttttgtgacgcagac |
20439651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 20445501 - 20445378
Alignment:
| Q |
20 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacacaaatagaaaattgttgcaagaggt |
119 |
Q |
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| T |
20445501 |
atgacaattgtgcttaaatgatatatcaatgctcatcaaatcaagttgatatttgtattga-ctaattgaccacgcccatagaaaatcccttcaagagct |
20445403 |
T |
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| Q |
120 |
tcaccattgtttttgtgatgcagac |
144 |
Q |
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||||| ||||||||||| |||||| |
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| T |
20445402 |
tcaccgatgtttttgtgacgcagac |
20445378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 20427084 - 20427010
Alignment:
| Q |
20 |
atgacaattgtgcttaaatgatatatcaatgccaatcaaatcatgttgataatcgtattgatttaattgaccacac |
95 |
Q |
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|||||||||||||||||||||| | | |||||| ||||||||| ||||||| | ||||||| ||||||||||||| |
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| T |
20427084 |
atgacaattgtgcttaaatgattttttaatgcccatcaaatcaagttgatatttgtattga-ctaattgaccacac |
20427010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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