View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16073_low_7 (Length: 377)
Name: NF16073_low_7
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_7 |
 | |
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| [»] chr2 (9 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr1 (5 HSPs) |
| |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 12258787 - 12259163
Alignment:
| Q |
1 |
tatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
12258787 |
tatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaatttggaac |
12258886 |
T |
|
| Q |
101 |
ttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12258887 |
ttttcaatgaatgcatgaagactgttgagagttgtcttacggatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctag |
12258986 |
T |
|
| Q |
201 |
gattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12258987 |
gattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctatt |
12259086 |
T |
|
| Q |
301 |
caggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
12259087 |
caggctgctttgttaagtgaagatatccagaatgttccaaagttggagctgcaggatgttacacctttgtctcttgg |
12259163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 3 - 377
Target Start/End: Complemental strand, 11999367 - 11998994
Alignment:
| Q |
3 |
tcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaactt |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| || |||||||||||| | ||| | || ||| |
|
|
| T |
11999367 |
tcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattgaatttagatctt |
11999268 |
T |
|
| Q |
103 |
ttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctagga |
202 |
Q |
| |
|
| ||||| || || |||||||||||||||||| ||| ||||| || | ||||||||||| | ||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
11999267 |
cttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgatgttgtacttgttggtggatcttctagga |
11999168 |
T |
|
| Q |
203 |
ttctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattca |
302 |
Q |
| |
|
| | |||||| || ||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| |
|
|
| T |
11999167 |
tcc-caaagtccaacagctattacatgactttttcaacgggaaggagttgtgcaagagcattaaccctgatgaggctgtagcttatggggcagctgttca |
11999069 |
T |
|
| Q |
303 |
ggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||| |||| | ||| ||||||||| |||||||||||||| |
|
|
| T |
11999068 |
agctgctttgttgagtgaagatgttaagaatgttccaaatttggtgttgcaggatgttactcctttgtctcttgg |
11998994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 3 - 371
Target Start/End: Original strand, 12245614 - 12245982
Alignment:
| Q |
3 |
tcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaactt |
102 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| || |||||||||||| | ||| | || ||| |
|
|
| T |
12245614 |
tcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattgaatttagatctt |
12245713 |
T |
|
| Q |
103 |
ttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctagga |
202 |
Q |
| |
|
| ||||| || || |||||||||||||||||| ||| ||||| || | ||||||||||| | |||||||| |||| ||||| ||||| |||||||||| |
|
|
| T |
12245714 |
cttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagtactatagatgattttgtacttgttggtggatcttctagga |
12245813 |
T |
|
| Q |
203 |
ttctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattca |
302 |
Q |
| |
|
||| |||||| || |||||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| |||||||| |||| |||||| ||| |||| |
|
|
| T |
12245814 |
ttcccaaagtccaacagctattacaggactttttcaacgggaaggaattgtgcaagagcattaaccctgacgaggctgttgcttatggggcagctgttca |
12245913 |
T |
|
| Q |
303 |
ggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtc |
371 |
Q |
| |
|
||||||||||| ||| ||||| | ||||||||||||| |||| | ||| ||||||||| |||||||| |
|
|
| T |
12245914 |
agctgctttgttgagtaaagatgttaagaatgttccaaatttggtgttgcaggatgttactcctttgtc |
12245982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 14703364 - 14702997
Alignment:
| Q |
7 |
gttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttca |
106 |
Q |
| |
|
||||| || ||||||||| ||||| |||||| | | ||||||| |||||| | || |||||| | ||||||||||| ||||| |||||||| |||| | |
|
|
| T |
14703364 |
gttgtcgccactattgaggtagatgctttatttcaatgcattgacttttcttcatcgatcaatagggccaagtttgaagaaatgaatatggactttttta |
14703265 |
T |
|
| Q |
107 |
atgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattct |
206 |
Q |
| |
|
|||| || |||||| ||||||||||||||||| |||||||| | ||||||||||| |||||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
14703264 |
atgagtgtgtgaagattgttgagagttgtcttattgatgctaagatggacaagagtagagtagatgatgttgttcttgtcggtgggtcttctcggattcc |
14703165 |
T |
|
| Q |
207 |
caaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggct |
306 |
Q |
| |
|
|||||| ||||| |||||||||| |||||| ||||||| ||||||||||| |||||||| |||||||| |||||||||| |||||| ||| |||||||| |
|
|
| T |
14703164 |
caaagtacagcaattattacaggactttttccaggggaaggagttgtgcaacagcattaaccctgatgaagctgtagcttatggggcagctgttcaggct |
14703065 |
T |
|
| Q |
307 |
gctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctct |
374 |
Q |
| |
|
|||||||| |||||||| || |||||||||| ||||||| | | | |||| |||||||||||||||| |
|
|
| T |
14703064 |
gctttgttgagtgaagacgtcaagaatgttccgaagttggtgcttcaggatattacacctttgtctct |
14702997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 4 - 377
Target Start/End: Complemental strand, 7542185 - 7541812
Alignment:
| Q |
4 |
cttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttt |
103 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||| | | |||||||| |||||| | || |||||| | |||||||||||||| || |||||||| |||| |
|
|
| T |
7542185 |
cttgttgttgccactattgaggtagattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatcttt |
7542086 |
T |
|
| Q |
104 |
tcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggat |
203 |
Q |
| |
|
| || || || |||| || ||||| || ||||||| |||||||| | ||||||||| | ||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
7542085 |
ttaacgagtgtatgacgattgttggaagctgtcttattgatgctaatatggacaagagcatgatagatgatgttgtccttgtcggcgggtcttcgaggat |
7541986 |
T |
|
| Q |
204 |
tctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcag |
303 |
Q |
| |
|
|| || ||| || ||||||||| |||| |||||||| || || || |||||||||||||||||||||||||||||||| |||| |||||| ||| ||||| |
|
|
| T |
7541985 |
tcccatagtacatcagctattaaaggactttttcaatggaaaggacttgtgcaagagcattaatcctgatgaggctgttgcttatggggcagctgttcag |
7541886 |
T |
|
| Q |
304 |
gctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||||| ||||| |||| || | |||| | ||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
7541885 |
gctgcattgttgagtggaggcgttaagaacgctccaaagttggtgctgcaggatgttacacctttgtctcttgg |
7541812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 4 - 272
Target Start/End: Complemental strand, 12234648 - 12234380
Alignment:
| Q |
4 |
cttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttt |
103 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| | || |||||| | ||||||||||||||||| |||||||| ||| |
|
|
| T |
12234648 |
cttgttgttgcaaccattgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggatcttc |
12234549 |
T |
|
| Q |
104 |
tcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggat |
203 |
Q |
| |
|
| | ||| || ||||||| ||||||||||||||||| |||||||| | |||||| |||| || ||||| ||||||||| | || ||||| |||||||| |
|
|
| T |
12234548 |
ttattgagtgtatgaagattgttgagagttgtcttagtgatgctaagatggacaaaagtagggtggatgaagttgtccttattggcgggtcctctaggat |
12234449 |
T |
|
| Q |
204 |
tctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctga |
272 |
Q |
| |
|
|| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
12234448 |
tcccaaagtgcagcaactattgcaggattttttcaaggggaaggagctgtgcaagagtattaaccctga |
12234380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 377
Target Start/End: Complemental strand, 43625359 - 43624998
Alignment:
| Q |
16 |
actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca |
115 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||| || | | | ||||||| ||||||||| ||||| |||||||||||||| |||||||| || || |
|
|
| T |
43625359 |
actattgaggtagattctttattccgtggtattgacttcttttcatcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtt |
43625260 |
T |
|
| Q |
116 |
tgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
|||| |||||| |||||||||||| ||||| || |||||||||| | | | |||||||||||||| || || || ||||| |||| ||||| | |
|
|
| T |
43625259 |
tgaaaactgttaagagttgtcttattgatgccaagttggacaagagtgctatccacgatgttgtccttgttggcggctcctctagaattccaaaagtaaa |
43625160 |
T |
|
| Q |
216 |
gcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgtta |
315 |
Q |
| |
|
||||| || ||||| |||||||||||||| || | ||| | ||||| || |||||||||||||| |||| ||| || ||| | ||||||||| | || |
|
|
| T |
43625159 |
acagctgttgcaggagtttttcaaggggaaggaatcatgcgaaagcataaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctattttg |
43625060 |
T |
|
| Q |
316 |
agtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||| ||| || ||||||||||||| |||| | |||| |||||||| |||||||| ||||| |
|
|
| T |
43625059 |
agtaaaggcattaagaatgttccaaaattggtgctgcgagatgttacccctttgtcacttgg |
43624998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 16657742 - 16657964
Alignment:
| Q |
20 |
ttgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaa |
119 |
Q |
| |
|
||||| |||||||||||| | | || ||||| |||||| | ||||||| |||||||||||||||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
16657742 |
ttgaggtagattctttatttcagggaattgacttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaa |
16657841 |
T |
|
| Q |
120 |
gactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcag |
219 |
Q |
| |
|
|||||||||| ||||||| ||| | || | | ||| || || | ||||| ||||| ||||| ||||| || |||||||||| |||||||||| | |
|
|
| T |
16657842 |
aactgttgagaattgtcttcgtgattcaaagatgcacattggtgatattgatgacgttgttcttgtgggtggctcatctaggattcccaaagtgcaggat |
16657941 |
T |
|
| Q |
220 |
ctattacaggattttttcaaggg |
242 |
Q |
| |
|
||||| || || ||||||||||| |
|
|
| T |
16657942 |
ctattgcaagactttttcaaggg |
16657964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 16662214 - 16662574
Alignment:
| Q |
17 |
ctattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcat |
116 |
Q |
| |
|
|||||||||| |||| ||||| || | |||||| || ||| | ||| ||| ||||| ||||||||| ||||| ||||||| ||||| || || || || |
|
|
| T |
16662214 |
ctattgagattgattatttatacgaggacattgacttctctacatcactcactcgtgtcaagtttgaagaaatcaatatgggcctttttaacgagtgtat |
16662313 |
T |
|
| Q |
117 |
gaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcag |
216 |
Q |
| |
|
||||| ||||||||||||| || ||| | || | ||||||| | |||| ||||| |||| ||||| || || || |||||||||| ||||||||| |
|
|
| T |
16662314 |
gaagattgttgagagttgttttgtggattcaaagatggacaaggggggtgtacatgatattgttcttgtcgggggctcgtctaggattccaaaagtgcag |
16662413 |
T |
|
| Q |
217 |
cagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaa |
316 |
Q |
| |
|
| |||| | | || ||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||||| ||| | || |||||| |||| | |
|
|
| T |
16662414 |
gaattattgcgtaacttcttcaatgggaaggagttgtgcaagagcatcaaccctgatgaggctgttgcttatggggcagctgtgcaagctgctgtgttga |
16662513 |
T |
|
| Q |
317 |
gtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|||||| || || |||||||||| |||| | |||| || ||||| || ||||| ||||| |
|
|
| T |
16662514 |
gtgaaggcattaaggatgttccaaacttggtgctgcgagacgttaccccattgtcacttgg |
16662574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 4 - 377
Target Start/End: Complemental strand, 35132416 - 35132042
Alignment:
| Q |
4 |
cttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttt |
103 |
Q |
| |
|
||||||||||| | |||||| |||||||||||| | | ||||||||||||||| | ||||||||||| ||||||||||||||||| ||| || |||| |
|
|
| T |
35132416 |
cttgttgttgccaatattgaagtagattctttatttcaaggcattgatttttcttcatcaatcaatcgcgccaagtttgaggaaatgaatgcagaccttt |
35132317 |
T |
|
| Q |
104 |
tcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatg-tagatgatgttgtccttgtaggtgggtcttctagga |
202 |
Q |
| |
|
| ||||| || ||||| || || ||||||||||| | |||||||| | ||||||||| || | ||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
35132316 |
ttaatgagtgtatgaataccgtagagagttgtctcattgatgctaagatggacaagagcaagggtagatgatgttgttcttgttggagggtcttctagga |
35132217 |
T |
|
| Q |
203 |
ttctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattca |
302 |
Q |
| |
|
||| |||||||||||||||||| || | |||||||| ||||| |||||||||||||||||||| || |||||||||||||||| |||||| || |||| |
|
|
| T |
35132216 |
ttcccaaagtgcagcagctattgcaaaactttttcaaagggaaggagttgtgcaagagcattaaccccgatgaggctgtagcttatggggcagcagttca |
35132117 |
T |
|
| Q |
303 |
ggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|||||||||||| ||| ||| || | |||||||||||||||| | | | |||||||||||||||||||||||| |
|
|
| T |
35132116 |
ggctgctttgttgagtaaaggcataaaaaatgttccaaagttggtgttacaggatgttacacctttgtctcttgg |
35132042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 377
Target Start/End: Complemental strand, 30775195 - 30774838
Alignment:
| Q |
20 |
ttgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaa |
119 |
Q |
| |
|
||||||||||| ||||| | | | |||||| |||||| | ||||||| ||||| ||||||||||||||| |||||||| ||||| ||||| || || | |
|
|
| T |
30775195 |
ttgagatagataatttatttcaagacattgacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataca |
30775096 |
T |
|
| Q |
120 |
gactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcag |
219 |
Q |
| |
|
||||||||||||||||||||| ||| | || |||||||||| |||||||||| |||| ||||| ||||| ||||||||||||| |||||||||| | |
|
|
| T |
30775095 |
gactgttgagagttgtcttactgattcaaaggtagacaagagtagtgtagatgatattgttcttgtcggtggttcttctaggattcccaaagtgcaggaa |
30774996 |
T |
|
| Q |
220 |
ctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtg |
319 |
Q |
| |
|
||||| | |||| ||||| ||||| || |||||||||||||| |||||||||||||| || ||| ||||| ||| | ||||||||| | || |||| |
|
|
| T |
30774995 |
ctattgcgtaatttcttcaatgggaaggatttgtgcaagagcatcaatcctgatgaggcagttgctcacggggcagctgtccaggctgctctattgagtg |
30774896 |
T |
|
| Q |
320 |
aagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||| || |||||| |||||||||| | |||| ||||| || |||||||| ||||| |
|
|
| T |
30774895 |
aaggcattaagaatgccccaaagttggtgctgcgagatgtcacccctttgtcacttgg |
30774838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 27)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 64 - 346
Target Start/End: Original strand, 27831144 - 27831426
Alignment:
| Q |
64 |
atcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta |
163 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||||| || || |||| | ||||||||||| |
|
|
| T |
27831144 |
atcactcgtgcaaagtttgaggaaatcaatatggaccttttcaatgaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagta |
27831243 |
T |
|
| Q |
164 |
atgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcat |
263 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||| ||| ||||||||||| || || |||||||||||||| |
|
|
| T |
27831244 |
gtatagatgatgttgtccttgttggtggctcttcaaggattcccaaagtgcagcagctattggcggactttttcaagggaaaggatttgtgcaagagcat |
27831343 |
T |
|
| Q |
264 |
taatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttgg |
346 |
Q |
| |
|
||||||||||||||||| |||||||| || ||| | |||||||||||||| ||||| || || |||||||||||| |||| |
|
|
| T |
27831344 |
caatcctgatgaggctgttgcttttggtgcagctgtgcaggctgctttgttgagtgatgacattatgaatgttccaaacttgg |
27831426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 47 - 319
Target Start/End: Complemental strand, 17267855 - 17267583
Alignment:
| Q |
47 |
ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgc |
146 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||| |||| |||||| ||| |||||||| ||||||| ||||| |
|
|
| T |
17267855 |
ttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgc |
17267756 |
T |
|
| Q |
147 |
taacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaa |
246 |
Q |
| |
|
||| | |||||||| | || ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||| | || ||||||||||| |
|
|
| T |
17267755 |
taagattgacaagagcagagttgatgatgttgtccttgttggtgggtcttctaggattccgaaagtgcagcaactattgcagaacttcttcaaggggaag |
17267656 |
T |
|
| Q |
247 |
gagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtg |
319 |
Q |
| |
|
|| || ||||| || || || |||||||||||||| |||| ||| || ||| ||||||||||||||||||||| |
|
|
| T |
17267655 |
gaattatgcaaaagtatcaaccctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtg |
17267583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 50 - 319
Target Start/End: Complemental strand, 17260154 - 17259885
Alignment:
| Q |
50 |
atttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaa |
149 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||||| |||||||| ||||| |||| |||||| ||| |||||||| ||||||| |||| ||| |
|
|
| T |
17260154 |
atttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggaccttttttatgagtgcatggagattgttgagaagtgtcttagtgatggtaa |
17260055 |
T |
|
| Q |
150 |
cacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagag |
249 |
Q |
| |
|
| |||||||| | | ||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||| || || |
|
|
| T |
17260054 |
gattgacaagagcagaattgatgatgttgtccttgttggtggatcttctaggattccgaaagtgcagcaactattgcaggatttcttcaagggtaaggaa |
17259955 |
T |
|
| Q |
250 |
ttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtg |
319 |
Q |
| |
|
|| ||||||||||| || |||||||||||||| |||| ||| || ||| ||||||||||||||||||||| |
|
|
| T |
17259954 |
ttatgcaagagcatcaaccctgatgaggctgttgcttatggtgctgctgttcaggctgctttgttaagtg |
17259885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 73 - 377
Target Start/End: Complemental strand, 6789402 - 6789098
Alignment:
| Q |
73 |
gccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatg |
172 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||| || |||||||| ||||||||||||||| || ||||| | ||||||||||| |||| ||| |
|
|
| T |
6789402 |
gccaagtttgaggaaatcaatatggatatttttaatgagtgtatgaagaccgttgagagttgtcttgttgacgctaagatggacaagagtattgtaaatg |
6789303 |
T |
|
| Q |
173 |
atgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctga |
272 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| || ||||| || || |||||| ||| || || ||||||| |||||| || ||||| |
|
|
| T |
6789302 |
atgttgtccttgttggtgggtcttctagaattcccaaagtgcaacaactattgcaagaagttttcatgggaaaggatttgtgcatgagcatcaaccctga |
6789203 |
T |
|
| Q |
273 |
tgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtct |
372 |
Q |
| |
|
||||||||| |||| || || ||| | |||||||||||||| || |||| ||| ||||||||| |||| | ||| ||||||||||| |||||| |
|
|
| T |
6789202 |
tgaggctgttgcttacggtgcagctgtccaggctgctttgttgagcgaaggctctaagagtgttccaaacttggtgctgcaagatgttacaccgttgtct |
6789103 |
T |
|
| Q |
373 |
cttgg |
377 |
Q |
| |
|
||||| |
|
|
| T |
6789102 |
cttgg |
6789098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 377
Target Start/End: Complemental strand, 8581542 - 8581286
Alignment:
| Q |
121 |
actgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagc |
220 |
Q |
| |
|
|||||| | ||||||||| |||||||||| | ||||| | ||| ||||||||||||||||||||| ||||| ||||||||||||| |||||| |||| |
|
|
| T |
8581542 |
actgttaatagttgtcttgccgatgctaagatggacaggggtagtgtagatgatgttgtccttgttggtggttcttctaggattcctaaagtgagacagc |
8581443 |
T |
|
| Q |
221 |
tattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtga |
320 |
Q |
| |
|
|||||||||| |||||| ||||||| || || ||||||||||| || |||||||||||||| |||| ||| || |||||||||||||||||| | ||||| |
|
|
| T |
8581442 |
tattacaggagtttttccaggggaaggaattatgcaagagcatcaaccctgatgaggctgttgcttatggtgctgctattcaggctgctttggttagtga |
8581343 |
T |
|
| Q |
321 |
agatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|| || ||| ||||||||| ||| |||| ||||||||||| ||||| ||||| |
|
|
| T |
8581342 |
aggcattaagagtgttccaaacttgattttgcgagatgttacaccattgtcacttgg |
8581286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 8616628 - 8616330
Alignment:
| Q |
16 |
actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca |
115 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||| ||||| ||| | ||||||| ||||| |||||||||||||| |||||||| ||||| || || || | |
|
|
| T |
8616628 |
actattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacgagtgta |
8616529 |
T |
|
| Q |
116 |
tgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
| |||||||||||||||||| ||| ||| |||| | || ||||||| |||||||||| |||| ||||| ||||| || |||||||||| |||||||| |
|
|
| T |
8616528 |
taaagactgttgagagttgttttaatgattctaagatagagaagagtagtgtagatgatattgttcttgtcggtggctcgtctaggattcctaaagtgca |
8616429 |
T |
|
| Q |
216 |
gcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgtt |
314 |
Q |
| |
|
| | ||||| || |||||| | ||||| || |||||||||| ||| ||||||||||||||||| ||| |||||| || |||||||||||||||| |
|
|
| T |
8616428 |
ggaactattgagtgactttttcgatgggaaggatttgtgcaagaacatcaatcctgatgaggctgttgctagtggggcagcagttcaggctgctttgtt |
8616330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 142 - 377
Target Start/End: Complemental strand, 8545454 - 8545219
Alignment:
| Q |
142 |
gatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaagg |
241 |
Q |
| |
|
|||||||| | ||||||| ||| ||||||||||||||||||||| || || ||||||||||||| |||||| |||||||||||||| ||||| |||| |
|
|
| T |
8545454 |
gatgctaagatggacaagggtagtgtagatgatgttgtccttgttggcggttcttctaggattcctaaagtgagacagctattacaggagttttttaagg |
8545355 |
T |
|
| Q |
242 |
ggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaa |
341 |
Q |
| |
|
|||| || || |||||||||||||| |||||||||||||| |||| ||| || ||| | |||||||||||| | |||||||| | ||||||| ||||| |
|
|
| T |
8545354 |
ggaaggaattatgcaagagcattaaccctgatgaggctgttgcttatggtgcagctgtccaggctgctttgctgagtgaagacaataagaatgtcccaaa |
8545255 |
T |
|
| Q |
342 |
gttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||| | | || |||||||| |||||||| ||||| |
|
|
| T |
8545254 |
catggtgctacgagatgttacccctttgtcacttgg |
8545219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 73 - 371
Target Start/End: Complemental strand, 8576216 - 8575918
Alignment:
| Q |
73 |
gccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatg |
172 |
Q |
| |
|
||||||||||||||||| |||||| | || || | | || ||||| |||||| | | ||||||| | |||||||| | |||||||| || |||||||| |
|
|
| T |
8576216 |
gccaagtttgaggaaatgaatatgaacctctttgaaaagtgtatgaatactgttaatatttgtcttgctgatgctaagatggacaagaatagtgtagatg |
8576117 |
T |
|
| Q |
173 |
atgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctga |
272 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||| || || || |||||||| || ||||| |
|
|
| T |
8576116 |
atgttgtccttgttggtggttcttctaggattcctaaagtgagacagctattacaggaggttttcaaggggaaggaattatgtaagagcatcaaccctga |
8576017 |
T |
|
| Q |
273 |
tgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtc |
371 |
Q |
| |
|
||||||||| |||| ||| || | | | || ||||||||||| ||||||| | ||||||||||||| |||| | | || ||||||||||| ||||| |
|
|
| T |
8576016 |
tgaggctgttgcttatggtgctgttgtccaagctgctttgttgagtgaaggcagtaagaatgttccaaacttggtgttacgagatgttacaccgttgtc |
8575918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 121 - 312
Target Start/End: Complemental strand, 8570153 - 8569962
Alignment:
| Q |
121 |
actgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagc |
220 |
Q |
| |
|
|||||| | ||||||||| | |||||||| | ||| |||| || ||||||||||||||||||||| ||||| ||||||||||||| |||||| ||||| |
|
|
| T |
8570153 |
actgttaatagttgtcttgctgatgctaagatggaaaagaatagtgtagatgatgttgtccttgttggtggttcttctaggattcctaaagtgaggcagc |
8570054 |
T |
|
| Q |
221 |
tattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttg |
312 |
Q |
| |
|
||||||| || |||||| ||||||| || || ||||| |||||||| |||||||||||||| |||| || || ||||||||||||| |||| |
|
|
| T |
8570053 |
tattacaagagtttttccaggggaaggaattatgcaacagcattaaccctgatgaggctgttgcttacggtgcagctattcaggctgttttg |
8569962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 128 - 377
Target Start/End: Original strand, 7878066 - 7878315
Alignment:
| Q |
128 |
agagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattaca |
227 |
Q |
| |
|
||||||||||||| ||||||| | |||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
7878066 |
agagttgtcttactgatgctatgatggacaagaacaatgtagatgatgttgtacttgttggtggatcatctaggattctcaaagtgcagcagctattgca |
7878165 |
T |
|
| Q |
228 |
ggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatc |
327 |
Q |
| |
|
||| ||||| |||||||| || | |||| ||||| || || ||||| ||||| |||| ||| || ||| ||||||||||| || | |||| | ||| |
|
|
| T |
7878166 |
ggacttttttaaggggaaggatatttgcagtagcatcaacccggatgaagctgttgcttatggtgcagctgttcaggctgctctgctttgtgatggtatt |
7878265 |
T |
|
| Q |
328 |
cagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|||||||||| || |||| | ||| |||||||| || ||||||||||| |
|
|
| T |
7878266 |
aagaatgttcctaatttggtgttgcaagatgttactccattgtctcttgg |
7878315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 8585927 - 8586288
Alignment:
| Q |
16 |
actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca |
115 |
Q |
| |
|
|||||||| || |||| ||||||||| ||| | ||||| ||| | ||||||| |||| ||||||||||||||| |||||||| ||||| ||||| || | |
|
|
| T |
8585927 |
actattgaaattgattatttatgtgagggcgtcgatttctcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgta |
8586026 |
T |
|
| Q |
116 |
tgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
| || |||||||||||||||||||||||| |||| | || |||| | |||||| ||| |||||||||| ||||| || || || |||| |||||| || |
|
|
| T |
8586027 |
taaatactgttgagagttgtcttaccgattctaagatagagaagaatggtgtagacgatattgtccttgtcggtggctcgtccagaattcccaaagtaca |
8586126 |
T |
|
| Q |
216 |
gcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgtta |
315 |
Q |
| |
|
| | ||||| || || ||||| |||||||| || ||||||| ||| ||||||||||||||||| ||| |||||| || |||||||| ||||| | |
|
|
| T |
8586127 |
ggaactattgagtgacttcttcaatgggaaagatttatgcaagaacatcaatcctgatgaggctgttgctagtggggctgcagttcaggcttctttgctg |
8586226 |
T |
|
| Q |
316 |
agtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|| |||| | |||| |||||||| |||| | |||| |||||||| ||| |||| ||||| |
|
|
| T |
8586227 |
tgtaaagactttaagaaagttccaaacttggtgctgcgagatgttacccctctgtcacttgg |
8586288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 312
Target Start/End: Original strand, 29582188 - 29582358
Alignment:
| Q |
142 |
gatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaagg |
241 |
Q |
| |
|
|||||||||| || |||||||| |||||||||| | |||||| | ||||| |||||||| |||| ||||||||| |||||||| || || |||||||||| |
|
|
| T |
29582188 |
gatgctaacatggtcaagagtagtgtagatgatatcgtccttattggtggctcttctagaattcccaaagtgcatcagctattgcaagaatttttcaagg |
29582287 |
T |
|
| Q |
242 |
ggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttg |
312 |
Q |
| |
|
|||| || ||||||| |||||| || |||||||||||||| |||| ||| || ||| | |||||||||||| |
|
|
| T |
29582288 |
ggaaggatttgtgcatgagcatcaaccctgatgaggctgttgcttatggtgcagctgtgcaggctgctttg |
29582358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 8590458 - 8590289
Alignment:
| Q |
143 |
atgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggg |
242 |
Q |
| |
|
||||||| | |||||||| | ||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||| || || ||||| | ||| |
|
|
| T |
8590458 |
atgctaagatggacaagaacattgtagatgatgttgtacttgttggtggttcttctaggattcccaaagtgcagcagctattgcaagacttttttatggg |
8590359 |
T |
|
| Q |
243 |
gaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttg |
312 |
Q |
| |
|
||| || | | ||| ||||| ||||| ||||||||||| |||| ||| || ||| |||| ||||||||| |
|
|
| T |
8590358 |
gaaggatctttacaatagcatcaatccagatgaggctgttgcttatggtgcagctgttcaagctgctttg |
8590289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 377
Target Start/End: Complemental strand, 8609714 - 8609503
Alignment:
| Q |
166 |
gtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcatta |
265 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||||| |||||| |||||||| | || || |||||||| || || || ||||| | |||||| | |
|
|
| T |
8609714 |
gtagatgatgttgttcttgttggaggttcttctaggattccgaaagtgaagcagctactgcaagactttttcaatggaaaggatttgtgtatgagcatca |
8609615 |
T |
|
| Q |
266 |
atcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacc |
365 |
Q |
| |
|
| ||||||||||| || |||| ||| || ||| | |||||||||||||| |||||| ||| | |||||||| |||| | |||| ||||||||||| |
|
|
| T |
8609614 |
accctgatgaggcggttgcttatggtgctgctgtccaggctgctttgttgggtgaaggcatcaaatcagttccaaacttggtgctgcgagatgttacacc |
8609515 |
T |
|
| Q |
366 |
tttgtctcttgg |
377 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
8609514 |
tttgtcacttgg |
8609503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 3147208 - 3146850
Alignment:
| Q |
19 |
attgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatga |
118 |
Q |
| |
|
||||||||||||||||||| | | || |||| || | | | ||||||| ||||||||||||||||||||| |||||||| ||||||| ||| || || |
|
|
| T |
3147208 |
attgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatcaatatggatcttttcactgagtgtttgg |
3147109 |
T |
|
| Q |
119 |
agactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagca |
218 |
Q |
| |
|
| |||||| |||||||| | | |||| | | |||||| ||| | || ||||||| |||||||| ||||| || ||||| |||| |||||||| || |
|
|
| T |
3147108 |
aaactgttaagagttgtttcgctgatgtcgaaatggacaaaagtgctatacatgatgtcgtccttgtcggtggctcgtctagaattccaaaagtgcaaca |
3147009 |
T |
|
| Q |
219 |
gctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagt |
318 |
Q |
| |
|
||||| ||||| ||||| ||||| | |||| || ||||| || ||||||||||| || |||| ||| || ||| | || ||||||||||| ||| |
|
|
| T |
3147008 |
actattgcaggaattttttgcagggaagcatctgtgtaacagcatcaaccctgatgaggccgttgcttatggtgcagctgtgcaagctgctttgttgagt |
3146909 |
T |
|
| Q |
319 |
gaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||||| | | ||||||||||| |||| | ||| |||||| | |||||||||||||| |
|
|
| T |
3146908 |
gaagactttaaaaatgttccaaacttggtggtgcaagatgttgctcctttgtctcttgg |
3146850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 8383200 - 8383305
Alignment:
| Q |
119 |
agactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagca |
218 |
Q |
| |
|
||||||||||||| |||||||| |||||||| | | ||||||||| ||||||||||||||| || | ||||| ||||| ||||||| ||||||||| | |
|
|
| T |
8383200 |
agactgttgagagctgtcttactgatgctaagatgaacaagagtagtgtagatgatgttgttctcatcggtggttcttcgaggattcccaaagtgcaaga |
8383299 |
T |
|
| Q |
219 |
gctatt |
224 |
Q |
| |
|
|||||| |
|
|
| T |
8383300 |
gctatt |
8383305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 157 - 286
Target Start/End: Original strand, 8636705 - 8636834
Alignment:
| Q |
157 |
aagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgca |
256 |
Q |
| |
|
||||| ||| ||||||||||||||||||| ||||| || |||||||||| || |||||||| ||||||||||| |||| |||| ||| || |||| | |
|
|
| T |
8636705 |
aagagcaatatagatgatgttgtccttgttggtggctcctctaggattccaaaggtgcagcaactattacaggacatttttaaggcgaaggaactgtgta |
8636804 |
T |
|
| Q |
257 |
agagcattaatcctgatgaggctgtagctt |
286 |
Q |
| |
|
||||||| || ||||||||||||| |||| |
|
|
| T |
8636805 |
agagcatcaacgctgatgaggctgttgctt |
8636834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 8659263 - 8659182
Alignment:
| Q |
63 |
aatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgat |
144 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||||| |||| |
|
|
| T |
8659263 |
aatcactcgtgccaggtttgaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcgat |
8659182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 215
Target Start/End: Complemental strand, 1301360 - 1301208
Alignment:
| Q |
63 |
aatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagt |
162 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||| ||||| || | || || |||||||||||||||| |||| | || | || |||| |
|
|
| T |
1301360 |
aatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgattcaaaaatatgcatgagt |
1301261 |
T |
|
| Q |
163 |
aatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
|| | |||||| |||| ||||| ||||| || |||||||||| ||||||||| |
|
|
| T |
1301260 |
gatatcgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgca |
1301208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 377
Target Start/End: Original strand, 29578019 - 29578254
Alignment:
| Q |
142 |
gatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaagg |
241 |
Q |
| |
|
|||||| ||| |||| |||||| ||| |||| |||||||||| || || || ||||| |||| |||||||| | | ||||| || || |||||||||| |
|
|
| T |
29578019 |
gatgcttacatggaccagagtatggtacatgaaattgtccttgttggaggttcatctagaattcccaaagtgcggaaactattgcaagactttttcaagg |
29578118 |
T |
|
| Q |
242 |
ggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaa |
341 |
Q |
| |
|
| | || ||||||| |||||| || ||||| |||||||| |||| ||| || ||| | |||||||||||||| | ||| | || ||||||||||||| |
|
|
| T |
29578119 |
gtagggatttgtgcatgagcataaaccctgacgaggctgttgcttatggtgcagctgtgcaggctgctttgttgattgatggcattaagaatgttccaaa |
29578218 |
T |
|
| Q |
342 |
gttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
|||| |||| ||| ||||||| ||||| ||||| |
|
|
| T |
29578219 |
tttggtcttgcgagatattacacccttgtcgcttgg |
29578254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 320
Target Start/End: Complemental strand, 8646814 - 8646520
Alignment:
| Q |
26 |
tagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgt |
125 |
Q |
| |
|
|||||||||||| | |||||||||| ||| | | ||||||| ||||||||| ||||| | ||| |||||||| || |||| ||||| || | ||||| |
|
|
| T |
8646814 |
tagattctttatttaatggcattgactttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatctgttcatcgaatgtttggaaactgt |
8646715 |
T |
|
| Q |
126 |
tgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctatta |
225 |
Q |
| |
|
||||||||||| || ||||| || | |||||||||| | | |||||||||| ||||| ||||| || ||||| |||| ||||| || ||| | | |
|
|
| T |
8646714 |
tgagagttgtcataatgatgccaagatggacaagagttctatccatgatgttgttcttgttggtggctcctctagaattccaaaagtacaacagatgctg |
8646615 |
T |
|
| Q |
226 |
caggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtga |
320 |
Q |
| |
|
|||| |||||||| | ||| || || ||| ||||||| || ||||||| ||| || |||| ||| || || ||||||||||||| ||| |||| |
|
|
| T |
8646614 |
aaggagtttttcaatgagaaggaattatgcgagagcatcaaccctgatgtggccgttgcttatggcgcagccgttcaggctgctttattatgtga |
8646520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 322
Target Start/End: Original strand, 10494631 - 10494901
Alignment:
| Q |
52 |
ttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaaca |
151 |
Q |
| |
|
|||||| | ||||||| ||||||||| ||||||||||| ||||| || |||||| || || ||||| | |||||| |||||||| | ||| | || | |
|
|
| T |
10494631 |
ttttcttcatcaatcactcgtgccaaatttgaggaaattaatatagactttttcatcgagtgtatgaatattgttgacagttgtctcagggattcaaaga |
10494730 |
T |
|
| Q |
152 |
cggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagtt |
251 |
Q |
| |
|
|||||| | || | |||||| |||| ||||| ||||| || |||||||||| |||||||||| | ||||| | || |||||||||||||| || || |
|
|
| T |
10494731 |
tatacaagaatgatattgatgatattgttcttgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagaatttttcaaggggaaggaatt |
10494830 |
T |
|
| Q |
252 |
gtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaag |
322 |
Q |
| |
|
| || | | || || || ||||||||||| |||| ||| || ||| ||||||||||| | || ||||||| |
|
|
| T |
10494831 |
attcatgcgtatcaacccagatgaggctgttgcttatggtgcagctgttcaggctgctattttgagtgaag |
10494901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 341
Target Start/End: Original strand, 27846566 - 27846652
Alignment:
| Q |
255 |
caagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaa |
341 |
Q |
| |
|
||||||||| || |||||||||||||| |||||||| || ||| | |||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
27846566 |
caagagcatcaaccctgatgaggctgttgcttttggagcagctgtgcaggctgctttgttgagtgatgacattaagaatgttccaaa |
27846652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 8654361 - 8654168
Alignment:
| Q |
52 |
ttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaaca |
151 |
Q |
| |
|
|||||| | ||||||| |||||| || ||||||||||| |||||||| |||||||||| || || || | |||||| |||||||| | ||| | || | |
|
|
| T |
8654361 |
ttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatattgttgacagttgtctcagagattcaaaga |
8654262 |
T |
|
| Q |
152 |
cggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaa |
245 |
Q |
| |
|
|||||| | || | ||||||||||| || || ||||| || |||||||||| |||||||||| | ||||| | || |||||||||||||| |
|
|
| T |
8654261 |
tatacaagaatgatattgatgatgttgtactcgtgggtggctcgtctaggattcccaaagtgcaggatctattgctagagtttttcaaggggaa |
8654168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 8601818 - 8601722
Alignment:
| Q |
119 |
agactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
|||||||||| |||||||||| |||||| | | || ||||||| ||| ||||||| ||||||||| || || ||||||||||||| ||||||||| |
|
|
| T |
8601818 |
agactgttgaaagttgtcttagtgatgctcagatcgaaaagagtagtgtggatgatgctgtccttgttggcggttcttctaggattcccaaagtgca |
8601722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 8537884 - 8537783
Alignment:
| Q |
115 |
atgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgc |
214 |
Q |
| |
|
||||| |||||| |||||||| ||| |||||||| | ||||| |||| | | ||||||||||| || || ||||| ||||||||||||| |||||||| |
|
|
| T |
8537884 |
atgaaaactgttaagagttgttttaatgatgctaagatggacagtagtagtatggatgatgttgtactagttggtggctcttctaggattcccaaagtgc |
8537785 |
T |
|
| Q |
215 |
ag |
216 |
Q |
| |
|
|| |
|
|
| T |
8537784 |
ag |
8537783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 39985356 - 39985300
Alignment:
| Q |
253 |
tgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgct |
309 |
Q |
| |
|
||||||||||| ||||||||||||||||| || | ||| || ||| ||||||||||| |
|
|
| T |
39985356 |
tgcaagagcataaatcctgatgaggctgttgcatatggtgctgctgttcaggctgct |
39985300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 69 - 377
Target Start/End: Complemental strand, 15594928 - 15594620
Alignment:
| Q |
69 |
tcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgta |
168 |
Q |
| |
|
|||| |||||||||| ||||| || ||||| |||| || || || ||||||| ||||||||||||||| |||||||| | | | ||||||| |||| |
|
|
| T |
15594928 |
tcgttccaagtttgaagaaatcaacatggacttttttaaggattgtatgaagatagttgagagttgtcttgatgatgctaagatgaataagagtagtgta |
15594829 |
T |
|
| Q |
169 |
gatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatc |
268 |
Q |
| |
|
||||| ||||| |||| ||||||||||||||||||| ||||||||| || ||||| ||||||||||| |||| || || ||||||| |||||| || | |
|
|
| T |
15594828 |
aatgatattgtcattgttggtgggtcttctaggattcccaaagtgcaacaactattgaaggattttttcgagggaaaggaattgtgcatgagcatcaacc |
15594729 |
T |
|
| Q |
269 |
ctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacaccttt |
368 |
Q |
| |
|
||||||||||||| |||| ||| || ||| | |||||||||||||| ||||||| | | | ||||||||||| |||| ||| | |||||| ||||||| |
|
|
| T |
15594728 |
ctgatgaggctgttgcttatggtgcagctgtccaggctgctttgttgagtgaaggttttaaaaatgttccaaacttggtgatacaagatgttgcaccttt |
15594629 |
T |
|
| Q |
369 |
gtctcttgg |
377 |
Q |
| |
|
||||||||| |
|
|
| T |
15594628 |
gtctcttgg |
15594620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 59 - 371
Target Start/End: Original strand, 34467049 - 34467364
Alignment:
| Q |
59 |
cgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatga---atgcatgaagactgttgagagttgtcttaccgatgctaacacgga |
155 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||| | || || || |||||||| || ||||| |||||||||| |||||||| | ||| |
|
|
| T |
34467049 |
cgtcaatcactcgtgccaagtttgaggaaatcaatatggacttctttaaagattaatgcatgaggattgttgtgagttgtcttgttgatgctaagatgga |
34467148 |
T |
|
| Q |
156 |
caagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgc |
255 |
Q |
| |
|
|| ||||| ||| |||||| ||||||||| || || ||||||||||||| |||||||||||||||||| | ||| |||||||| || || || | ||| |
|
|
| T |
34467149 |
cacgagtagtgtgcatgatgctgtccttgtcgggggctcttctaggattcccaaagtgcagcagctattgcgggactttttcaatggtaaggatctatgc |
34467248 |
T |
|
| Q |
256 |
aagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttggggatgcggg |
355 |
Q |
| |
|
|| ||||| || |||||||||||||| |||| || || ||| | || ||||||||||| ||| ||| | | ||||||||||| |||| | |||| | |
|
|
| T |
34467249 |
aatagcatcaaccctgatgaggctgtcgcttatgtcgcagctgtgcaagctgctttgttgagtaaaggctttaacaatgttccaaacttggtgctgcgag |
34467348 |
T |
|
| Q |
356 |
atgttacacctttgtc |
371 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
34467349 |
atgttacaccattgtc |
34467364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 247 - 376
Target Start/End: Original strand, 52549398 - 52549527
Alignment:
| Q |
247 |
gagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagtgaagatatccagaatgttccaaagttgg |
346 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||| ||| || ||| |||||||||| ||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
52549398 |
gagttgtgcaagggcattaatcctgatgaggttgtagcttatggcgcagctgttcaggctgcattgttgagtgaaggcattcagaatgttccaaagttgg |
52549497 |
T |
|
| Q |
347 |
ggatgcgggatgttacacctttgtctcttg |
376 |
Q |
| |
|
| ||| ||||||||||||||||||||||| |
|
|
| T |
52549498 |
tgctgcaggatgttacacctttgtctcttg |
52549527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 309
Target Start/End: Original strand, 4678831 - 4679071
Alignment:
| Q |
69 |
tcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgta |
168 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| || || ||| | |||||| |||||||||||| ||| | || | | | ||||||| | |
|
|
| T |
4678831 |
tcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtcttagtgattcaaagatgcgcgggagtaatatt |
4678930 |
T |
|
| Q |
169 |
gatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatc |
268 |
Q |
| |
|
||||||||||| ||||| ||||| || || ||||||| |||||||||| | ||||| || || ||||| ||| |||| || ||||||||||| || || | |
|
|
| T |
4678931 |
gatgatgttgttcttgtgggtggttcatcgaggattcccaaagtgcaggatctattgcaagacttttttaagcggaaggatttgtgcaagagtatcaacc |
4679030 |
T |
|
| Q |
269 |
ctgatgaggctgtagcttttggggcggctattcaggctgct |
309 |
Q |
| |
|
| ||||||||||| |||| ||| || ||||| || |||||| |
|
|
| T |
4679031 |
cagatgaggctgttgcttatggtgcagctatccaagctgct |
4679071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 52549264 - 52549353
Alignment:
| Q |
47 |
ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtc |
136 |
Q |
| |
|
||||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||| || || || ||||||| |||||| ||||||| |
|
|
| T |
52549264 |
ttgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc |
52549353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 12528348 - 12528145
Alignment:
| Q |
119 |
agactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgcagca |
218 |
Q |
| |
|
|||| ||||| |||||| | ||||||||||| | ||||||||||| |||||||||| |||| ||||| ||||| || |||||||||| ||||||| |||| |
|
|
| T |
12528348 |
agaccgttgaaagttgtttgaccgatgctaagatggacaagagtagtgtagatgatattgtacttgttggtggctcgtctaggattcccaaagtgaagca |
12528249 |
T |
|
| Q |
219 |
gctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgttaagt |
318 |
Q |
| |
|
|||||| ||||| ||||||||||| || ||||| | ||||||||| || |||||||||||||| |||| ||| || ||| |||||||||||||||| ||| |
|
|
| T |
12528248 |
gctattgcaggagtttttcaagggcaaggagttatacaagagcatcaaccctgatgaggctgttgcttatggtgccgctgttcaggctgctttgttgagt |
12528149 |
T |
|
| Q |
319 |
gaag |
322 |
Q |
| |
|
|||| |
|
|
| T |
12528148 |
gaag |
12528145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 43744763 - 43744457
Alignment:
| Q |
16 |
actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca |
115 |
Q |
| |
|
||||||||| |||||||||||| ||| ||||||||||| | | | |||||| |||| | |||||||||||||| |||||||| || ||||| || || |
|
|
| T |
43744763 |
actattgaggtagattctttatttgagggcattgatttctttacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtgtt |
43744664 |
T |
|
| Q |
116 |
tgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattctcaaagtgca |
215 |
Q |
| |
|
|||| | |||||||||||||||||| ||||| || | ||||||||| | || |||||||||| ||||| ||||| || |||||||||| ||||| || |
|
|
| T |
43744663 |
tgaaaattgttgagagttgtcttactgatgccaagatggacaagagcgctatacatgatgttgttcttgttggtggctcctctaggattccaaaagtaca |
43744564 |
T |
|
| Q |
216 |
gcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggctgctttgtta |
315 |
Q |
| |
|
|| ||||| ||||| ||||| ||||| || ||||| |||| |||||| ||||||||||| || ||| |||| || ||| | |||||||||||||| |
|
|
| T |
43744563 |
acaactattgcaggaattttttgcagggaaggatttgtgtaagaacattaaccctgatgaggcagttgctattggtgcagctgtgcaggctgctttgttg |
43744464 |
T |
|
| Q |
316 |
agtgaag |
322 |
Q |
| |
|
||||||| |
|
|
| T |
43744463 |
agtgaag |
43744457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 28219875 - 28219504
Alignment:
| Q |
6 |
tgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttc |
105 |
Q |
| |
|
|||||| || || |||||| |||||||||||| ||| ||||||||||| | | | ||||| | |||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
28219875 |
tgttgtcgccaccattgaggtagattctttatttgaaggcattgatttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttc |
28219776 |
T |
|
| Q |
106 |
aatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtagatgatgttgtccttgtaggtgggtcttctaggattc |
205 |
Q |
| |
|
||||| || |||| ||||||||||| ||||| || ||||| || | ||||||||| |||| | |||||||| ||||| || || || ||||| |||| |
|
|
| T |
28219775 |
aatgagtgtttgaaaactgttgagaggtgtctcactgatgccaatatggacaagagggctgtacacgatgttgttcttgttggaggctcctctagaattc |
28219676 |
T |
|
| Q |
206 |
tcaaagtgcagcagctattacaggattttttcaaggggaaagagttgtgcaagagcattaatcctgatgaggctgtagcttttggggcggctattcaggc |
305 |
Q |
| |
|
||||| || || ||| | ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||| |||| ||| || ||| | ||||| |
|
|
| T |
28219675 |
caaaagtacaacaactactgcaggaattttttggagggaaggaattgtgtaagagcattaaccctgatgaggctgttgcttatggtgcagctgtgcaggc |
28219576 |
T |
|
| Q |
306 |
tgctttgttaagtgaagatatccagaatgttccaaagttggggatgcgggatgttacacctttgtctcttgg |
377 |
Q |
| |
|
||||||||| ||||||| | | || ||||| ||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
28219575 |
tgctttgttgagtgaaggctttaaaaaagttccgaagttggtgctgcaagatgttacacctttgtctcttgg |
28219504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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