View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16073_low_8 (Length: 376)
Name: NF16073_low_8
Description: NF16073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16073_low_8 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 107 - 357
Target Start/End: Complemental strand, 23120 - 22870
Alignment:
| Q |
107 |
tagtactaaaagaaatctataaatagagcaatttaatgaccacaaaccattcattccacttctccccaatatttatacttttgccaaatatgcattcttt |
206 |
Q |
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| T |
23120 |
tagtactaaaagaaatctataaatagagcaatttaatgaccacaacccattcattccacttctccccaatatttatacttttgccaaatatgcattcttt |
23021 |
T |
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| Q |
207 |
tatattcttgttttccgccctatgttcactttattctccatcctttgttgaatccactaaaaaccctagtggcttcgaagttgaacttattcatcatgat |
306 |
Q |
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| T |
23020 |
tatattcttgttttccgccctatgttcactttattcaccatcctttgttgaatccactaaaaaccctagtggctttgaagttgaacttattcatcatgat |
22921 |
T |
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| Q |
307 |
tcaccattgtcacccttttacaactcttccctaacctcatccgagctaatc |
357 |
Q |
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| T |
22920 |
tcaccattgtcacccttttacaactcttccctaacctcatccgagctaatc |
22870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 71 - 357
Target Start/End: Complemental strand, 15140 - 14859
Alignment:
| Q |
71 |
gaggaatatatttcacatttgaaaagtctcattaactagtactaaaagaaatctataaataga-gcaatttaatgaccacaaaccattcattccacttct |
169 |
Q |
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| T |
15140 |
gaggaatatatctcacatatcaaaagtctcatta--tagtactaaaagaaatctataaatagaagcactt----gaccacaaaccattcattcaacttct |
15047 |
T |
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| Q |
170 |
ccccaatatttatacttttgccaaatatgcattcttttatattcttgttttccgccctatgttcactttattctccatcctttgttgaatccactaaaaa |
269 |
Q |
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| T |
15046 |
cccctatatttatacttttatcaactatgcatgcttttatattcttgttttctgccttatgttcactttatactccatcctttgttgaatccaccaaaaa |
14947 |
T |
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| Q |
270 |
ccctagtggcttcgaagttgaacttattcatcatgattcaccattgtcacccttttacaactcttccctaacctcatccgagctaatc |
357 |
Q |
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| T |
14946 |
ccctagtggcttcgaagttgaacttattcatcatgattcaccattgtcacccttttacaactcttcccttacctcatcggagttaatc |
14859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 23491 - 23391
Alignment:
| Q |
13 |
aatattttacataatgatttatattataatttgggatagatgagtggtatattcgttggaggaatatatttcacatttgaaaagtctcattaactagtac |
112 |
Q |
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| T |
23491 |
aatattttacataatgatttatattataatttgggacagatgagtggtatattcgttggaggaatatatttcacatttgaaaagtctcattaattagtac |
23392 |
T |
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| Q |
113 |
t |
113 |
Q |
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| T |
23391 |
t |
23391 |
T |
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