View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_1 (Length: 524)
Name: NF16074_high_1
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 52 - 508
Target Start/End: Original strand, 8482621 - 8483076
Alignment:
| Q |
52 |
taaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
151 |
Q |
| |
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|||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8482621 |
taaaattctctatccaaacacact--tagaggagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataacaa |
8482718 |
T |
|
| Q |
152 |
agtcact-atctttccagactagtggtggcgatctggaacattggaaatactttgtactcatgatgatgttttgatcaacctcttgaatggttactatgt |
250 |
Q |
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| T |
8482719 |
actcacttatctttccagactagtggtggtgatctggaacattggaaatactttgtacttatgatgatgttttgatcaacctcttgaatggttactatgt |
8482818 |
T |
|
| Q |
251 |
caaaccg---tcacaaacatttgaagagaaagatcaatcctgccgtgttac-aaacccacaggctgggaatgtttcactgtctttgtcatcttataatct |
346 |
Q |
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||||||| || || ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8482819 |
caaaccgtactcccacacatttgaagagaaagatcaatcctgcggtattacaaaacccacaggctgggaatgtttcactgtctttgtcatcttagaatct |
8482918 |
T |
|
| Q |
347 |
aatccaacattggaaacatattggaaatcacataaattgaataagttaatcaaaccctcaaattttagaacataataattggataagttattctttccag |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
8482919 |
aatccaacattggaaacatattggaaatcacataaattg----agttataagtaccctcaaattttagaacataataattgaatgagttattctttccag |
8483014 |
T |
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| Q |
447 |
ctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
508 |
Q |
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|||| |||||||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
8483015 |
ctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacaccatggacatat |
8483076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 253 - 508
Target Start/End: Complemental strand, 8355517 - 8355261
Alignment:
| Q |
253 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatcca |
352 |
Q |
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||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8355517 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagaatctaatcca |
8355418 |
T |
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| Q |
353 |
acattggaaacatattggaaatcacataaattgaataagttaatc-aaaccctcaaattttagaacataataattggataagttattctttccagctcca |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355417 |
acattggaaacatattggaaatcacataaattgaataagttaatcgaaaccctcaaattttagaacataataattggataagttattctttccagctcca |
8355318 |
T |
|
| Q |
452 |
ggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355317 |
ggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
8355261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 253 - 508
Target Start/End: Complemental strand, 8349464 - 8349213
Alignment:
| Q |
253 |
aaccgtcacaaacatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatctaatcca |
352 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8349464 |
aaccgtcccacacatttgaagagaaagatcaatcctgcggtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttagtatctaatcca |
8349365 |
T |
|
| Q |
353 |
acattggaaacatattggaaatcacataaattga---ataagttaatcaaaccctcaaattttagaacataataattggataagttattctttccagctc |
449 |
Q |
| |
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|||||||||| |||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
8349364 |
acattggaaaaatattggaaatcacatgaattgagctataagt-------accctcaaattttataacataataattggatgagttattctttccagctt |
8349272 |
T |
|
| Q |
450 |
caggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
508 |
Q |
| |
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||||||||||||||| || |||||||||||| |||||||||||||||||||| |||| |
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| T |
8349271 |
tgggtagacatcgattgtagtcgctgaatgcatttccatctgccacaccatggatatat |
8349213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 8355690 - 8355517
Alignment:
| Q |
15 |
caaaggcgattaccaattcatagtataattccccgattaaaattctctatccaaacacactcttagtgtagtttttattctgatcttagtataatttctc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
8355690 |
caaaggcgattaccaattcatagtataattccccgattaaaattctctatccaaacacacttttagtgtagtttttattct---cttagtataatttctc |
8355594 |
T |
|
| Q |
115 |
ttctatttaggaacatcccaaaagttgttcataacaaagtcactatctttccagactagtggtggcgatctggaaca |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8355593 |
ttctatttaggaacatcccaaaagttgttcataacaaactcactatctttccagactagtggtggcgatctggaaca |
8355517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 264 - 505
Target Start/End: Complemental strand, 8350564 - 8350325
Alignment:
| Q |
264 |
acatttgaagagaaagatcaatcctgccgtgttacaaacccacaggctgggaatgtttcactgtctttgtcatcttataatcta--atccaacattggaa |
361 |
Q |
| |
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||||||||||||||| ||||||| || |||| | ||||| |||||| | ||||||||||| |||||||||| || |||||| ||| |||||||||| |
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| T |
8350564 |
acatttgaagagaaatatcaatcatgttgtgtcataaacc-acaggccgtaaatgtttcacttcctttgtcatcctagaatctataatctaacattggaa |
8350466 |
T |
|
| Q |
362 |
acatattggaaatcacataaattgaataagttaatcaaaccctcaaattttagaacataataattggataa-----gttattctttccagctccaggtag |
456 |
Q |
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| ||| | ||||||||| ||||||||| | ||| ||||||||||||||| |||| ||||| | |||||||||||||||||||| | | |
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| T |
8350465 |
aaatactagaaatcacagcaattgaatatg--------accttcaaattttagaacacgataagtggatgaattgagttattctttccagctccagctgg |
8350374 |
T |
|
| Q |
457 |
acatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
505 |
Q |
| |
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||||||||||||| || ||||| | |||||||||||| |||||||||| |
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| T |
8350373 |
acatcgattggagtcgatgaataaagctccatctgccaaaccatggaca |
8350325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 432 - 505
Target Start/End: Original strand, 8480715 - 8480788
Alignment:
| Q |
432 |
agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
505 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| | || |||| | |||||||||||||||||| |||| |
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|
| T |
8480715 |
agttattctttccagctccagctagacatagattggagtctcttaatgaagctccatctgccacaccattgaca |
8480788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 37486059 - 37485994
Alignment:
| Q |
81 |
tgtagtttttattctgatcttagtataatttctcttctatttaggaacatcccaaaagttgttcataac |
149 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
37486059 |
tgtagtttttattct---cttagcatagtttctcttccatttatgaacaacccaaaagttgttcataac |
37485994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 378
Target Start/End: Complemental strand, 8432760 - 8432701
Alignment:
| Q |
319 |
tttcactgtctttgtcatcttataatctaatccaacattggaaacatattggaaatcaca |
378 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| |||||| ||||||||||||||||||| |
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| T |
8432760 |
tttcactgcctttgtcatcctataattgaatctaacattaaaaacatattggaaatcaca |
8432701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 454 - 508
Target Start/End: Original strand, 1169539 - 1169593
Alignment:
| Q |
454 |
tagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
508 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1169539 |
tagagatcgattggagcggctgaatgcatctccatctgccacaccctggacatat |
1169593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 36866296 - 36866344
Alignment:
| Q |
104 |
tataatttctcttctatttaggaacatcccaaaagttgttcataacaaa |
152 |
Q |
| |
|
||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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|
| T |
36866296 |
tataatttctctttcatttatgaacaaccaaaaagttgttcataacaaa |
36866344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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