View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_14 (Length: 266)
Name: NF16074_high_14
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 713240 - 713006
Alignment:
| Q |
17 |
catagggtaaaataaagaacaaatttaacaataaatttagtgattcaagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttg |
116 |
Q |
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| T |
713240 |
catagggtaaaataaagaacaaatttaacaataaatttagtgattcaagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttg |
713141 |
T |
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| Q |
117 |
aagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagcattagcaattgtgatt |
216 |
Q |
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|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
713140 |
aagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggattagatccaaatacagcattagcaattgtgatt |
713041 |
T |
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| Q |
217 |
acacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
713040 |
acaccaggattttggctgctaagtccagcaatagc |
713006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 710512 - 710701
Alignment:
| Q |
62 |
caagcacatatcacagcctgcaattctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgag |
161 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
710512 |
caagtacatatcacgacctgcaattctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgag |
710611 |
T |
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| Q |
162 |
aacttctgaagagatttttggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
710612 |
aacttctgaagagatttttggattagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagc |
710701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 702266 - 702432
Alignment:
| Q |
85 |
ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
184 |
Q |
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| T |
702266 |
ttctagtagttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
702365 |
T |
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| Q |
185 |
tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
702366 |
tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
702432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 85 - 251
Target Start/End: Original strand, 717568 - 717734
Alignment:
| Q |
85 |
ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
184 |
Q |
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| T |
717568 |
ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat |
717667 |
T |
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| Q |
185 |
tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
717668 |
tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagc |
717734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 83 - 197
Target Start/End: Complemental strand, 717029 - 716918
Alignment:
| Q |
83 |
aattctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgg |
182 |
Q |
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| T |
717029 |
aattctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---g |
716933 |
T |
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| Q |
183 |
attagatccaaatac |
197 |
Q |
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| T |
716932 |
attagacccaaatac |
716918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 248
Target Start/End: Complemental strand, 35313843 - 35313697
Alignment:
| Q |
102 |
ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagca |
201 |
Q |
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| T |
35313843 |
ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca |
35313744 |
T |
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| Q |
202 |
ttagcaattgtgattacacctggattttggctgctaagtccagcaat |
248 |
Q |
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| T |
35313743 |
tttgcaatggtaatcactccagggttttggctactaagaccagcaat |
35313697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 20354033 - 20353993
Alignment:
| Q |
211 |
gtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
20354033 |
gtgattactcctggattttgactgctaagtccagcaatagc |
20353993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 20357809 - 20357862
Alignment:
| Q |
198 |
agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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| T |
20357809 |
agcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagc |
20357862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 5278442 - 5278495
Alignment:
| Q |
198 |
agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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|||||| |||| ||||| || ||||||||||| |||||||||||||||||||| |
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| T |
5278442 |
agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagc |
5278495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 5286423 - 5286476
Alignment:
| Q |
198 |
agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagc |
251 |
Q |
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|||||| |||| ||||| || ||||||||||| |||||||||||||||||||| |
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| T |
5286423 |
agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagc |
5286476 |
T |
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