View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_18 (Length: 249)
Name: NF16074_high_18
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_18 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 26317120 - 26317032
Alignment:
| Q |
161 |
gtacaaattatgtagaaatttatcaagaaaatcaaacaaagtggcttatgtacctttacaatttgcttgatctactaaacatatataat |
249 |
Q |
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| T |
26317120 |
gtacaaattatgtagaaatttatcaagaaaatcaaacaaagtggcttatgtacctttacaatttgctcgatctactaaacatatataat |
26317032 |
T |
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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 26317203 - 26317115
Alignment:
| Q |
13 |
aacaatatggatatttacctgcttattgtggtaaattttttgcaggtatattttggcacaacc-agattataacaaatggacagtacaa |
100 |
Q |
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| T |
26317203 |
aacaatatggatatttacctgcttattgtggtaaattttttgcaggtatattttggcacaacctagattataacaaatggaaagtacaa |
26317115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 28576082 - 28576014
Alignment:
| Q |
173 |
tagaaatttatcaagaaaatcaaacaaagtggcttatgtacctttacaatttgcttgatctactaaaca |
241 |
Q |
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| T |
28576082 |
tagaaatttatcaagaacatcaaccaaagcggcttctttacctttacaatttactttatcttctaaaca |
28576014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 140
Target Start/End: Complemental strand, 28589722 - 28589656
Alignment:
| Q |
74 |
ccagattataacaaatggacagtacaagagcttagtacacagaacagttactaaccctgatagagca |
140 |
Q |
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| T |
28589722 |
ccagattataacaaatggaaagtacaggagctgtgtgcatagagcagttactaatcctgatagagca |
28589656 |
T |
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