View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_3 (Length: 416)
Name: NF16074_high_3
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 28690288 - 28690697
Alignment:
| Q |
1 |
ttgacgctaacatgtgtatatatatacaactaattaacgttattgttgtagtttgtctgtgaggatattctatgtagaattcttggtttgaatccggtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
28690288 |
ttgacgctaacatgtgtatatatatacaactaattaacgttattgttgtagtttgtctgtaaggatattctatgtagaatttttggtttgaatccggtca |
28690387 |
T |
|
| Q |
101 |
ccacatttcctgttcgtgtgtgtttctttgaatattggttggtcaatagaccaataactaatnnnnnnnn--tataaaagtactttgtaaagcctaaata |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28690388 |
ccacatttcctgttcgtgtgtgtttctttgaatattggttggtcaatagaccaataactaataaaaaaaaaatataaaagtactttgtaaagcctaaata |
28690487 |
T |
|
| Q |
199 |
gtcattgcatgagaaacaaaaatatacaattaggaatatgaattgataaataggtctaagtgtgacataaatgtgcattatagtaaatatgtattaatgt |
298 |
Q |
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|| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28690488 |
gtgattgcatgagaaacaaaaatatacaattagcaatacgaattgataactaggtctgagtgtgacataaatgtgcattatagtaaatatgtattaatgt |
28690587 |
T |
|
| Q |
299 |
ttcaggccctggctgttcttcaattggctatggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaaccca |
398 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28690588 |
ttcaggccctggttgttcttcaattggctatggagaagcagaggaacttggaccctttttcccccaaaatagcagccaacctaagctcaagttgaaccca |
28690687 |
T |
|
| Q |
399 |
tattcttgga |
408 |
Q |
| |
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|||||||||| |
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| T |
28690688 |
tattcttgga |
28690697 |
T |
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