View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_5 (Length: 355)
Name: NF16074_high_5
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 45120741 - 45121094
Alignment:
| Q |
1 |
acataactacaagattatgaatgattagaataaatatcaaatgttatcttgcaaatgaataattgacaacaaaatacaattcattatttactttcatttc |
100 |
Q |
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| T |
45120741 |
acataactacaagattatgaatgattagaataaatatcaaatgttatcttgcaaatgaataattgacaacaaaatacaattcattatttactttcatttc |
45120840 |
T |
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| Q |
101 |
attgttttttctgagaaatagtgatattaaatttaatctagttactaacaatgtcaaaataaaaagacccataattttcaaactaccccaacttccaata |
200 |
Q |
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| T |
45120841 |
attgttttttctgagaaatagtgatattaaatttaatctagttactaacaatgtcaaaataaaaagacccataattttcaaactaccccaacttccaata |
45120940 |
T |
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| Q |
201 |
tatcacacatggagaggagcatnnnnnnnttatttattttttggttatggccaaaactgtgtgactgtcatatagaaattttgcttttcaaatcgttgaa |
300 |
Q |
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| T |
45120941 |
tattacacatggagagaagattaaaaaaattatttattttttggttatggccaaaactgtgtgactgccatatagaaattttg-atttcaaatcgttgaa |
45121039 |
T |
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| Q |
301 |
gtaacccaaatataggatgatattttttcgcaccacatttgaaattttcaggtca |
355 |
Q |
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| T |
45121040 |
gtaacccaaatataggatgatattttttcacaccacatttgaaattttcaggtca |
45121094 |
T |
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