View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_6 (Length: 352)
Name: NF16074_high_6
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 227
Target Start/End: Original strand, 33278113 - 33278329
Alignment:
| Q |
11 |
cacagataacctaatgtcaattaaattgttcaactttaacaaaggtgtatcatatacaaattacataacatagtagacaagaagaaaaatgtaccaagat |
110 |
Q |
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| T |
33278113 |
cacacataacctaatgtcaattaaattgttcaactttaacaaaggtgtatcatatacaaattacataacatagtagacaagaagaaaaatgtaccaagat |
33278212 |
T |
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| Q |
111 |
attctttcccctcctgaatggatccttgaaaattgcttgaggactgttataaaaacaatatcaattagaaaagcttatgaatggtattaatgctaaatgt |
210 |
Q |
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| T |
33278213 |
attctttcccctcctgaatggatccttgaaaattgcttgaggactgttataaaaacaatatcaattagaaaagcttatgaatggtattaatgctaaatga |
33278312 |
T |
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| Q |
211 |
attcaaggggaatggta |
227 |
Q |
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| T |
33278313 |
atccaaggttaatggta |
33278329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 225 - 336
Target Start/End: Original strand, 33278384 - 33278495
Alignment:
| Q |
225 |
gtaataaaaattacagaaagtaaagagacttactgcaagatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgg |
324 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33278384 |
gtaataaaaattacaaaaagtaaagaggcttactgcaagatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgg |
33278483 |
T |
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| Q |
325 |
gaagctttgaag |
336 |
Q |
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| T |
33278484 |
gaagctttgaag |
33278495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 267 - 336
Target Start/End: Original strand, 29443326 - 29443395
Alignment:
| Q |
267 |
acttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgggaagctttgaag |
336 |
Q |
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| T |
29443326 |
acttcactatcttctccaggagcttgacctgtgctggaaccatcatagttccacttgggaagctgtgaag |
29443395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 29443147 - 29443194
Alignment:
| Q |
102 |
taccaagatattctttcccctcctgaatggatccttgaaaattgcttg |
149 |
Q |
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| T |
29443147 |
taccaagatattgttaccccttctgaatggatccttgaaaatggcttg |
29443194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 7204915 - 7204982
Alignment:
| Q |
263 |
gatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgggaagct |
330 |
Q |
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| T |
7204915 |
gatcacttcactatcttcaccaggggcttgtccagtgctagaaccatcgtagttccacttaggaagct |
7204982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 7193572 - 7193639
Alignment:
| Q |
263 |
gatcacttcactatcatctccagaagcttgaccagtgctggaaccatcatagttccacttgggaagct |
330 |
Q |
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|||||||||| |||| || |||| ||||| |||||||| || ||||||||||||||||| ||||||| |
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| T |
7193572 |
gatcacttcagtatcttcaccaggggcttgtccagtgctagatccatcatagttccacttaggaagct |
7193639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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