View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16074_high_7 (Length: 324)
Name: NF16074_high_7
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 41796137 - 41795841
Alignment:
| Q |
14 |
cagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaac |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41796137 |
cagaaataacatagttttaacttttgagatatgctaattaattagctataactagttttatgaatcaagaagctttcctgagtttgaaatgactcctaac |
41796038 |
T |
|
| Q |
114 |
aattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattatatgtatatatggtcatggactaatctcatat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41796037 |
aattcctaagctataataccagttcctcgagccttttagataatgtgtttcggttctttatatcattat-tgtatatatggtcatggactaatctcatat |
41795939 |
T |
|
| Q |
214 |
tagtatattccatttattattaacttcttgtttaaggatattccnnnnnnnnnctccatatacatggcatcttgttaatcatactattatcagtattat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41795938 |
tagtatattccatttattattaacttcttgcttaaggatattccatttttttt-tccatatacatggcatcttgttaatcatactattatcattattat |
41795841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University