View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_high_9 (Length: 312)
Name: NF16074_high_9
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 3015155 - 3014852
Alignment:
| Q |
1 |
actaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015155 |
actaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagctta |
3015056 |
T |
|
| Q |
101 |
cccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgcttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3015055 |
cccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgcttt |
3014956 |
T |
|
| Q |
201 |
cttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattctcaacatcctcaaagaatttatcaaggttgatact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3014955 |
cttcatttgcctcttgtaattttctataaagcttttcgacaagcctcatgtcttctttcacattctcaacatcctcaaagaatttatcaaggttgatact |
3014856 |
T |
|
| Q |
301 |
ctct |
304 |
Q |
| |
|
|||| |
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| T |
3014855 |
ctct |
3014852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 35955982 - 35956209
Alignment:
| Q |
1 |
actaaccactgaagttcttgttctatctgctgatgaacctggaccacaccctggaatgtttctattcgcggcattcgaacgttctaatgcttcaagctta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| || |||||||| || || |
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| T |
35955982 |
actaaccactgaagttctagttctatctgctgatgaacctggaccacaccctggaatgtttctattagctgcatttgaacgatccaatgcttcgagtttt |
35956081 |
T |
|
| Q |
101 |
cccttaatgattttgactcttttgagaacctgttcaacatctttatccatccttgctctaagatctttcattgttttagcattgtggacaattttgcttt |
200 |
Q |
| |
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|| ||||| |||||||| | ||| || || |||||||||||||| ||||| | ||||| ||| |||||||| |||||||||||||| || |||| |||| |
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| T |
35956082 |
cctttaataattttgacacgtttaaggacttgttcaacatctttgtccattcgtgctcgaagttctttcatggttttagcattgtgcacggttttacttt |
35956181 |
T |
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| Q |
201 |
cttcatttgcctcttgtaattttctata |
228 |
Q |
| |
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||||||| ||||||| ||||| ||||| |
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| T |
35956182 |
cttcattagcctctttcaatttcctata |
35956209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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