View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_12 (Length: 310)
Name: NF16074_low_12
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 27568174 - 27567911
Alignment:
| Q |
9 |
tcgaagaaaattacaatgtaaaaatgatccacaccctgacacacacaatgtagaggcatgatcaataacaccacgatgttgaagattgtccttattgact |
108 |
Q |
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| T |
27568174 |
tcgaaaaaaattacaatgtaaaaatgatccacaccctgacacacacaatgtagaggcatgatcaataacaccacgacgttgaagaatgtccttattgact |
27568075 |
T |
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| Q |
109 |
atatatattttagatttttatgttcacaaacgttcttccgctaatgaagttgagtataatagaaagagttagactctcacaatcaaatgaatcaataatc |
208 |
Q |
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| T |
27568074 |
atatatattttagatttttctgttcacaaacgttcttccgttaatgaagttgagtataatagaaggagttagattctcacaatcaaatgaatcaataatc |
27567975 |
T |
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| Q |
209 |
gaactctgactaagaacgatacccatacttagtgttcgacatgtttcaaataaacttacacatt |
272 |
Q |
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| T |
27567974 |
gaactctgactaagaacgatacccatacttagtgttcgacatatctcaaataaacttacacatt |
27567911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 41683533 - 41683600
Alignment:
| Q |
195 |
atgaatcaataatcgaactctgactaagaacgatacccatacttagtgttcgacatgtttcaaataaa |
262 |
Q |
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| T |
41683533 |
atgaatcaatattcgaatattgactaagaatgatacccatatttagtgttatacatgtttcaaataaa |
41683600 |
T |
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