View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16074_low_13 (Length: 286)

Name: NF16074_low_13
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16074_low_13
NF16074_low_13
[»] chr2 (5 HSPs)
chr2 (19-286)||(28699263-28699530)
chr2 (92-286)||(28734836-28735030)
chr2 (93-282)||(28741970-28742159)
chr2 (26-63)||(28734805-28734842)
chr2 (106-229)||(28782803-28782926)
[»] chr8 (9 HSPs)
chr8 (98-239)||(2029856-2029997)
chr8 (98-239)||(10769503-10769644)
chr8 (98-286)||(2051942-2052130)
chr8 (98-239)||(1948036-1948177)
chr8 (116-286)||(2059003-2059173)
chr8 (150-239)||(2034774-2034863)
chr8 (150-239)||(2048095-2048184)
chr8 (151-286)||(2055799-2055934)
chr8 (98-239)||(2038852-2038993)
[»] chr4 (1 HSPs)
chr4 (174-232)||(48904892-48904950)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 28699263 - 28699530
Alignment:
Q  19 attaagatctacaatcatattgaaaattgttattatttcccaactactaaataaaccagctcaatccaaattatccaactcaaagcttgaaatgttgaag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  28699263 attaagatctacaatcatattgaaaattgttattatttcccaactactaaataaaccagctcaatccacattatccaactcaaagcttgaagtcttgaag 28699362  T
Q  119 aacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattct 218  Q
    ||||||||| |||||||||||||||||| | | |||||||| | |||||||||  ||||||||| | |||||||||||||||| ||||||||||||||||    
T  28699363 aacagaagtgccatcaagcccttttgcatacacgtaggctataaaatcagcaacagtggtttctttgtatctgggagggttgttttctgataataattct 28699462  T
Q  219 gttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattct 286  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  28699463 gttataggtccataaagctttttatgtgctctaagacctgccttgaaaaagcatgcaacagatattct 28699530  T

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Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 92 - 286
Target Start/End: Original strand, 28734836 - 28735030
Alignment:
Q  92 tccaactcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctg 191  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734836 tccaactcaaagcttgaaatgttgaagaacagaagtgccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctg 28734935  T
Q  192 ggagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattct 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28734936 ggagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattct 28735030  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 28741970 - 28742159
Alignment:
Q  93 ccaactcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgg 192  Q
    |||||||||||||||||||||| |||| | ||  | ||||||||||||||||||    ||||||||||| |||| | ||| ||||||||||||||||| |    
T  28741970 ccaactcaaagcttgaaatgttcaagagctgagatgccatcaagcccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttg 28742069  T
Q  193 gagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagata 282  Q
    ||||||||||||||||||| | |||| ||||||||||||| |||||||| ||||||||| | |||||| |||||||  ||||||||||||    
T  28742070 gagggttgtcttctgataaaatttcttttataggtccatagagcttttcttgtgctctaggacctgccctgaaaaaagatgcaacagata 28742159  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 28734805 - 28734842
Alignment:
Q  26 tctacaatcatattgaaaattgttattatttcccaact 63  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  28734805 tctacaatcatattgaaaattgttattattttccaact 28734842  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 28782803 - 28782926
Alignment:
Q  106 tgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttc 205  Q
    |||||||||||||| ||||  | ||||||| |||||||| |    ||||||||||||| || | ||  ||  ||||| | ||| ||||||| ||||||||    
T  28782803 tgaaatgttgaagagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttc 28782902  T
Q  206 tgataataattctgttataggtcc 229  Q
    |||||| |||||| ||||||||||    
T  28782903 tgataaaaattcttttataggtcc 28782926  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 2029997 - 2029856
Alignment:
Q  98 tcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggaggg 197  Q
    ||||| |||| |||||  |||| ||||||||||||| || |||||||||   ||||||||| || |||||||||  ||||||||||| ||| |||||||     
T  2029997 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcattaaagtaggctgcaaaatcagcaactgtggtttctctgtatttgggagga 2029898  T
Q  198 ttgtcttctgataataattctgttataggtccataaagcttt 239  Q
    |||| ||||||||||| |||  | ||||||||||| ||||||    
T  2029897 ttgttttctgataatagttccttcataggtccatagagcttt 2029856  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 10769644 - 10769503
Alignment:
Q  98 tcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggaggg 197  Q
    ||||| |||| |||||  |||| ||||||||||||| || ||||||||    || ||||||||||| |||||||  | ||||||||| ||| |||||||     
T  10769644 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgcttcaaaataggctacatagtcagcaactgaggtttctctgtatatgggagga 10769545  T
Q  198 ttgtcttctgataataattctgttataggtccataaagcttt 239  Q
    |||||||||||||||| |||  ||||||||||||| ||||||    
T  10769544 ttgtcttctgataatagttcctttataggtccatagagcttt 10769503  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 2052130 - 2051942
Alignment:
Q  98 tcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggaggg 197  Q
    ||||| |||| |||||  |||| ||||||||||||| || |||||||| |  ||||||||||||||||||||||  |  |||||||| ||| |||||||     
T  2052130 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctcgaaagtaggctacataatcagcaacagaagtttctctgtatttgggagga 2052031  T
Q  198 ttgtcttctgataataattctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattct 286  Q
    |||||||||||||  | |||  | ||||||||||| ||||||  |  |||| ||||| |||    ||||||||||||||| ||||||||    
T  2052030 ttgtcttctgatagcagttccttcataggtccatagagctttgaagatgctttaagtgctgtggagaaaaagcatgcaacggatattct 2051942  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 1948036 - 1948177
Alignment:
Q  98 tcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggaggg 197  Q
    ||||| |||| |||||  |||| ||||||||||||| || ||||||||    ||||||||| ||||||||||||  ||||||||||||||| ||| |||     
T  1948036 tcaaatcttgtaatgtgtaagagcagaagtaccatctagtccttttgctttaaagtaggctgcataatcagcaactgtggtttctctatatttggaagga 1948135  T
Q  198 ttgtcttctgataataattctgttataggtccataaagcttt 239  Q
    || | ||||||||||| |||  | ||||||||||| ||||||    
T  1948136 ttcttttctgataatagttccttcataggtccatagagcttt 1948177  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 286
Target Start/End: Complemental strand, 2059173 - 2059003
Alignment:
Q  116 aagaacagaagtaccatcaagcccttttgcacataagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataat 215  Q
    |||| ||||||||||||| || | |||||| |  ||| ||||||||||||||||||  |  |||||||| ||| ||||||| |||||||||||||||| |    
T  2059173 aagagcagaagtaccatctagtctttttgctcgaaagcaggctacataatcagcaacagaagtttctctgtatttgggaggattgtcttctgataatagt 2059074  T
Q  216 tctgttataggtccataaagcttttcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattct 286  Q
    ||  | || |||||||| || |||  |  |||| | |||||||    ||||||||||||||||||||||||    
T  2059073 tccttcattggtccatagagttttgaagatgctttgagtcctgtggagaaaaagcatgcaacagatattct 2059003  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 2034863 - 2034774
Alignment:
Q  150 aagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttt 239  Q
    ||||| ||||||||||||| || ||| |||||||| ||| | ||||| |||||||||||||||| |||  ||||||||||||| ||||||    
T  2034863 aagtaagctacataatcagaaaccgttgtttctctgtatttaggaggattgtcttctgataatagttcctttataggtccatagagcttt 2034774  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 2048184 - 2048095
Alignment:
Q  150 aagtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttt 239  Q
    ||||||| |||||| || ||||  ||||||||||| ||| | ||||| |||||||||||||||| |||| | ||||||||||| ||||||    
T  2048184 aagtaggttacatagtctgcaactgtggtttctctgtatttaggaggattgtcttctgataatagttctttcataggtccatagagcttt 2048095  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 2055934 - 2055799
Alignment:
Q  151 agtaggctacataatcagcaaacgtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccataaagcttttcatgtgctct 250  Q
    |||||||||||||||||||||  || |||||| | ||| | ||||| |||||||||||||| | |||  | || |||||||| ||||||     |||| |    
T  2055934 agtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataacagttccttcattggtccatagagctttgaggatgcttt 2055835  T
Q  251 aagtcctgccttgaaaaagcatgcaacagatattct 286  Q
    |||||| | |  ||||||||||||||||||||||||    
T  2055834 aagtcccgtcgagaaaaagcatgcaacagatattct 2055799  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 239
Target Start/End: Complemental strand, 2038993 - 2038852
Alignment:
Q  98 tcaaagcttgaaatgttgaagaacagaagtaccatcaagcccttttgc-acataagtaggctacataatcagcaaacgtggtttctctatatctgggagg 196  Q
    ||||| |||| |||||  |||| ||||||||||||| |  |||||| | ||| ||||| |||| ||| |||||||  ||||||||||| ||| | |||||    
T  2038993 tcaaatcttgtaatgtgtaagagcagaagtaccatctaatcctttttctaca-aagtacgctagatagtcagcaactgtggtttctctgtatttaggagg 2038895  T
Q  197 gttgtcttctgataataattctgttataggtccataaagcttt 239  Q
     ||||||||||||||||  ||  |||| |||||||| ||||||    
T  2038894 attgtcttctgataatagatcctttattggtccatagagcttt 2038852  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 48904892 - 48904950
Alignment:
Q  174 gtggtttctctatatctgggagggttgtcttctgataataattctgttataggtccata 232  Q
    ||||||||||| ||| ||||||| |||||||| ||||||| |||  |||||||||||||    
T  48904892 gtggtttctctgtatttgggaggattgtcttcagataatagttcctttataggtccata 48904950  T

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