View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_16 (Length: 277)
Name: NF16074_low_16
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 42 - 260
Target Start/End: Original strand, 21554524 - 21554742
Alignment:
| Q |
42 |
ctaaagaagcctttttctttgttgtcttataacttattatgttcaaaggatcnnnnnnnnctctctctcaatctctcctcattaaaccaaagaaagggaa |
141 |
Q |
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| T |
21554524 |
ctaaagaagcctttttctttgttgtcttataacttattatgttcaaaggatcttttttttctctctctcaatctctcctcattaaaccagagaaagggaa |
21554623 |
T |
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| Q |
142 |
gcaacaatgtgaaacaattgaagcttctccaataactctttgccatggtttgtgcctcttttctccactctaaggaaaagttcttcacttagcttgtcac |
241 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21554624 |
gcaacaatgtgaaacaattgaagcttctccaatagctctttgccatggtttgtgcctcttttctccactctaaggaaaagttcttcacttagcttgtcac |
21554723 |
T |
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| Q |
242 |
caatatgagcatcaacaag |
260 |
Q |
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||||||||||||||||||| |
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| T |
21554724 |
caatatgagcatcaacaag |
21554742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 20851590 - 20851646
Alignment:
| Q |
204 |
ctccactctaaggaaaagttcttcacttagcttgtcaccaatatgagcatcaacaag |
260 |
Q |
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| T |
20851590 |
ctccactctaaggaagagctcctcactaaggttatcaccaatgtgagcatcaacaag |
20851646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 40999228 - 40999284
Alignment:
| Q |
204 |
ctccactctaaggaaaagttcttcacttagcttgtcaccaatatgagcatcaacaag |
260 |
Q |
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| T |
40999228 |
ctccactctaaggaagagctcctcactaaggttatcaccaatgtgagcatcaacaag |
40999284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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