View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_22 (Length: 250)
Name: NF16074_low_22
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 47 - 249
Target Start/End: Original strand, 40263046 - 40263248
Alignment:
| Q |
47 |
taagtataacttcgtaaacttagcatgctctctcttgaaactcatttgcaaactctaataaaactatgaaactacgtagaatatgtctcatgagttgggg |
146 |
Q |
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| T |
40263046 |
taagtataacttcgtaaacttagcatgctctctcttgaaactcatttgcaaactctaataaaattatgaaactacgtagaatatgtctcatgagtt-ggg |
40263144 |
T |
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| Q |
147 |
tctcgtctcacctcaaaaacattatatcacactcactatgtgcataaaagt-atgttatctcttcgttgtggcgaagagtaccatatttctccttcctct |
245 |
Q |
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| T |
40263145 |
tctcgtctcacctcaaaaacattatattacactcactatgtgcataaaagtcatgttatctcttcgttgtggcgaagagtaccatatttctccttcctct |
40263244 |
T |
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| Q |
246 |
tttt |
249 |
Q |
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|||| |
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| T |
40263245 |
tttt |
40263248 |
T |
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