View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_24 (Length: 247)
Name: NF16074_low_24
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 31854763 - 31854528
Alignment:
| Q |
1 |
aacacatcgcacagcaaaacagtacaggaaacaaaatctccactgcctcccc-acaaaacagacctgctcaagacagcagtaacagaagcaaattctgct |
99 |
Q |
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| T |
31854763 |
aacacatcgcacagcaaaacagtacaggaaacaaaatctccactgcctcccccacaaaacagacctgcccaagacagcagtaacagaagcaaattctgct |
31854664 |
T |
|
| Q |
100 |
gtcacagacacgcaggaaaacagtccataaaattttcccgttgtacttcatacctccaattggtcttatgtaccatttccattgc-----tattgtaatt |
194 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
31854663 |
gtcacagacacgcaggaaaacagtccataaaatattcccgttgtacttcataccttcaattggtcttatgtaccatttccattgctgctatattgtaatt |
31854564 |
T |
|
| Q |
195 |
atactattgagtgaatgaaattttagtgcaattact |
230 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31854563 |
atactattgagtgaatgaaattttagtgcaattact |
31854528 |
T |
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