View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_25 (Length: 240)
Name: NF16074_low_25
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38608848 - 38609080
Alignment:
| Q |
1 |
tcatcacatgcaacctaactagaacatacagtgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
100 |
Q |
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| T |
38608848 |
tcatcacatgcaacctaactagaacatacattgttcggtttaaacaagtcaccctcaatatatgcaacctaagaaacgatatgagaataaataactacta |
38608947 |
T |
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| Q |
101 |
ggnnnnnnngaacaacgtagcatatccatagagagc--------taatcaacaagacccttatttgccaatgcataccaaaatgtcaccaaaacacaagt |
192 |
Q |
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|| ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||| |
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| T |
38608948 |
ggaaaaaaagaacaacgtagcatatccatacagagctaatcaaataatcaacaaaacccttatttgccaatacataccaaaatgtcaccaaagcacgagt |
38609047 |
T |
|
| Q |
193 |
atcatttgcaa-aagtataacaaaccatgttgt |
224 |
Q |
| |
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|||||| |||| ||||| ||||||||| |||| |
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| T |
38609048 |
atcattggcaatcagtatcacaaaccatattgt |
38609080 |
T |
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