View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_29 (Length: 209)
Name: NF16074_low_29
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 8447206 - 8447022
Alignment:
| Q |
13 |
aataatcaattagtattttcaattttaattgtataacatcagagtcaagagctatatgtcggtacgtatgtgagaaaaatagagagaaagggaacaaaca |
112 |
Q |
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| T |
8447206 |
aataatcaattagtattttcaatttaaattgtataacatcagagtcaagagcgatatgtcggtacgtatgcgagaaaaatatagagaaagggaacaaaca |
8447107 |
T |
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| Q |
113 |
actgtatgatacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttca |
197 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8447106 |
actgtatggtacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttca |
8447022 |
T |
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