View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16074_low_30 (Length: 208)
Name: NF16074_low_30
Description: NF16074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16074_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 4858463 - 4858634
Alignment:
| Q |
21 |
ccttctgatgtgcttttccgaatcaatttttgtcaaaacataaccaaacatacacagtaaacaaaaaatttggtttatttttgtttataaatcattttga |
120 |
Q |
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| T |
4858463 |
ccttctgatgtgcttttcggaatcaatttttgtcaaaacataaccaaacatacacagtaaacaaaaaatttggtttatttttgtttataaattattttga |
4858562 |
T |
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| Q |
121 |
agggagcagtttagttaaaagaaaaaatcttgtgacatggtaataatttcaacgatgaaacttttgtgtctc |
192 |
Q |
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| T |
4858563 |
agggagcagtttagttaaaagaaaaaatcttgtgacatggtaataatttcaacgatgaaacttttgtgtctc |
4858634 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 22882929 - 22882962
Alignment:
| Q |
41 |
aatcaatttttgtcaaaacataaccaaacataca |
74 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
22882929 |
aatcaatttttgtcacaacataaccaaacataca |
22882962 |
T |
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