View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_high_10 (Length: 336)
Name: NF16075_high_10
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 101 - 319
Target Start/End: Original strand, 20479289 - 20479507
Alignment:
| Q |
101 |
aaaatccttggactactttgacgagttatcgttgacacatttacttttcgctagattggcaatgtagcttccgtgttgtcggtgtcagagagttgacatt |
200 |
Q |
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| T |
20479289 |
aaaatccttggactactttgacgagttatcattgacacatttacttttcgctagattggcaatgttgcttccgtgttgtcggtgtcagagagttgacatt |
20479388 |
T |
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| Q |
201 |
ctttcttttcgattcctttagattggtgttcaacagaggtattggtgtagccatagcagcagttgtgtttttctgctttacggggcattcctgtttcatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20479389 |
ctttcttttcgattcctttagattggtgttcaacagaggtattggtgtagccgtagcagcagttgtgtttttctgctttacggggcattcctgtttcatg |
20479488 |
T |
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| Q |
301 |
attcattgttatttttgtt |
319 |
Q |
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|||||||||||||||||| |
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| T |
20479489 |
gttcattgttatttttgtt |
20479507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 20478791 - 20478853
Alignment:
| Q |
21 |
aacctggatttctattttgattcaacttgcaggttaatacgaagtatataactaataaattga |
83 |
Q |
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| T |
20478791 |
aacctggatttctattttgattcaacttgcaggttaatacgaagtatataactaataaattga |
20478853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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