View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_high_12 (Length: 322)
Name: NF16075_high_12
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_12 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 113 - 322
Target Start/End: Original strand, 53479362 - 53479574
Alignment:
| Q |
113 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtg---ttacccn |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53479362 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtggtgttaccca |
53479461 |
T |
|
| Q |
210 |
nnnnnngttgtgactaatgtaattttcacgatgtttacagtttttgaggggactggactcaatcgtgcaaatgtgaaaataaagaggtctgataatactg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479462 |
aaaaaagttgtgactaatgtaattttcacgatgtttacagtttttgaggggattggactcaatcgtgcaaatgtgaaaataaagaggtctgataatactg |
53479561 |
T |
|
| Q |
310 |
ttgtagttgcatt |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
53479562 |
ttgtagttgcatt |
53479574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 53479213 - 53479331
Alignment:
| Q |
1 |
attctaatgaatga---cttgatgaacctattctaaatttaattgcaattcatttttctcccaaaaaattcgttctgtgttttggttatgnnnnnnnnat |
97 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
53479213 |
attctaatgaatgaaaacttgatgaacctattctaaatttaattgcaattcatttttctcccaaaaaattcgttctgtgttttcgttatgttttttttat |
53479312 |
T |
|
| Q |
98 |
ggaagattctttaggttaa |
116 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
53479313 |
ggaagattctttaggttaa |
53479331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University