View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_high_16 (Length: 279)
Name: NF16075_high_16
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 9359512 - 9359254
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9359512 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaacatatcacatccttttcgacttatgaatgac |
9359413 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
9359412 |
ccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcaccgtgttaactctgttttcaggtaaatactatgtgcaggaaatcaact |
9359313 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
|| | |||||||||||| |||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
9359312 |
acgtaaattacacaattcggctagttgatccagtaattgaagagggtaattgctcctcc |
9359254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 263
Target Start/End: Original strand, 9244952 - 9245210
Alignment:
| Q |
2 |
tgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgacc |
101 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| || ||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
9244952 |
tgtgatgccattactaattcaaataaccaaatat---gtccaccttcttcatgtggaaaaatcagcaacatcaaacatccgtttcgacttatgaatgacc |
9245048 |
T |
|
| Q |
102 |
caacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaacta |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
9245049 |
caacaagctgtggtgatccgaagtatgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgtgaaggcaatcaacta |
9245148 |
T |
|
| Q |
202 |
caactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcctcccttc |
263 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
9245149 |
caacaactacacaattttgttagttgatcccggaattgaagagggtagttgctcctcccttc |
9245210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8960160 - 8959905
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
8960160 |
atgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaattggaaacatatcacatccttttcgacttaaggatgac |
8960061 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||||||||| |||||||||| |
|
|
| T |
8960060 |
ccaacatcatgtggtgatccgaggtacgagttatcctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgtgaaatcaatcaact |
8959961 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcc |
256 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
8959960 |
acaataactacacaattcggttagttgatcccggaattgaagagggtgattgctcc |
8959905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 8936639 - 8936384
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| |||||||||| | |||| |
|
|
| T |
8936639 |
atgtgatgcaattacaaatactagtaaccaaacattctgtccaccttcttcatgcggcaaaatcacaaacataacacatccatttcgacttaaggatgat |
8936540 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
|||||| ||||||||||| | ||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
8936539 |
ccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgtgaaatcaatcaact |
8936440 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcc |
256 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
8936439 |
acaataactacacaattcggttagttgatcccggaattgaagagggtgattgctcc |
8936384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 9335774 - 9335516
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||| |||||| |||||||||| ||||||| |
|
|
| T |
9335774 |
atgtgatgcaattactaatacaaataacaaaacatattgtccaccttcttcatgcggcaaaatcagcaacatcaaacatccgtttcgacttaagaatgac |
9335675 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
||| ||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| || |||||||| |
|
|
| T |
9335674 |
ccagcaacctgtggtgatccaaagtacgagttatcctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgtgcaggaaatcaact |
9335575 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
||| |||||||||||||| |||||||||| |||||| |||| ||| ||| ||||||| |
|
|
| T |
9335574 |
acataaactacacaattcggttagttgatccaggaattgaagaaggtgattactcctcc |
9335516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 8924998 - 8924740
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| | |||| |||||||||| |||||| |
|
|
| T |
8924998 |
atgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaatcaacaacataaaatatccgtttcgacttaagaatgat |
8924899 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||| || ||| |||||||||||||||| |||||||||| |
|
|
| T |
8924898 |
ccaacaacctgtggtgatccgaggtacgagttatcctgcgaaaacaacataacaactttaactctattgtcgagtaaatactatgtgaaatcaatcaact |
8924799 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
8924798 |
acaataactacacaatcagaatagttgatcccggaattgaagagggtgattgctcctcc |
8924740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 9475207 - 9475443
Alignment:
| Q |
23 |
aataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgacccaacaagctgtggtgatccga |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
9475207 |
aataaccaaacaaattgtccaccttcttcatgtggcaaactcacaaacataaaacatccgtttcgactcaagaatgatccaacaacctgtggtgatccga |
9475306 |
T |
|
| Q |
123 |
agtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaactacaactactacacaattcgggt |
222 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||| || |||||||||| ||| |||||||||||||||||||| | |||||||||| | | |
|
|
| T |
9475307 |
ggtacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcgggtaactacaatgtgaagtcaatcaactacgataactacacaatcagact |
9475406 |
T |
|
| Q |
223 |
agttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
||||||||| ||||||||||||| | |||||| |||| |
|
|
| T |
9475407 |
agttgatcctggaattcaagaggatgattgcttctcc |
9475443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 9306728 - 9306986
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||||||||||| | || |||||||| | ||||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
9306728 |
atgttatgcaattactattactaataaccaaacatattgtccatcctcatcatgtggcacaatcagaaacataaaacatccttttcgacttcagaatgat |
9306827 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
||| ||| ||| |||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
9306828 |
ccagcaaactgcggtgatccgaggtatgagttatcctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgtgaaatcaatcaact |
9306927 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
||| ||||| |||| | |||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
9306928 |
acagaaactactcaatgagagtagttgatcttggaattcaagaaggtgattgctcctcc |
9306986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 8946097 - 8945879
Alignment:
| Q |
37 |
ttgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgacccaacaagctgtggtgatccgaagtacgagttatcc |
136 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||| |||| || ||||||| |||||| ||| ||| ||| |||||||||| ||||||||||||| |
|
|
| T |
8946097 |
ttgtcccccttcttcatgtggcaaaatcagcaacataaagtatcccttccgacttaagaatgatccagcaacctgcggtgatccgaggtacgagttatcc |
8945998 |
T |
|
| Q |
137 |
tgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaactacaactactacacaattcgggtagttgatcccggaa |
236 |
Q |
| |
|
|| ||||| ||||||||| |||||| ||| |||| ||||||||| |||| || |||||||||||||| |||||||||||||| |||||||||| |||| |
|
|
| T |
8945997 |
tgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaaatcaatcaactacaataactacacaattcggttagttgatcctggaa |
8945898 |
T |
|
| Q |
237 |
ttcaagagggtaattgctc |
255 |
Q |
| |
|
| |||| ||| ||||||| |
|
|
| T |
8945897 |
taaaagaaggtgattgctc |
8945879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9168666 - 9168430
Alignment:
| Q |
1 |
atgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgac |
100 |
Q |
| |
|
||||||||||| || ||||| ||||||||| || |||||||||||||||||||| ||||| | ||||||| |||||| || ||||||| ||||| |
|
|
| T |
9168666 |
atgtgatgcaactagtaatagtgataaccaaaaattatgtccaccttcttcatgtggcaaaatgagaaacataaaacatccgttccgacttaaaaatgat |
9168567 |
T |
|
| Q |
101 |
ccaacaagctgtggtgatccgaagtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaact |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
9168566 |
ccaacaaactgtggtgatccgaggtacgagttatcctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatactatgtgaaatcaatcaact |
9168467 |
T |
|
| Q |
201 |
acaactactacacaattcgggtagttgatcccggaat |
237 |
Q |
| |
|
|||| |||||||||| | ||||||||||| ||||| |
|
|
| T |
9168466 |
acaaaaactacacaatcagagtagttgatcctggaat |
9168430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 15912698 - 15912934
Alignment:
| Q |
23 |
aataaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttatgaatgacccaacaagctgtggtgatccga |
122 |
Q |
| |
|
|||||| |||||| ||||||| |||||||||| |||||||||| |||||| |||||| |||||||||| |||||||||| | | |||||| ||||||| |
|
|
| T |
15912698 |
aataacaaaacattttgtccaacttcttcatgcggtaaaatcagcaacataaaacatccatttcgacttaagaatgacccagcgacctgtggggatccga |
15912797 |
T |
|
| Q |
123 |
agtacgagttatcctgtgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtgaagtcaatcaactacaactactacacaattcgggt |
222 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||| ||||||||| ||||| ||||||||| | ||||||||| || ||||||||||| || | |
|
|
| T |
15912798 |
gctacgagttatcctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgtgttggaaatcaactataaaaactacacaattaggtt |
15912897 |
T |
|
| Q |
223 |
agttgatcccggaattcaagagggtaattgctcctcc |
259 |
Q |
| |
|
||||||| |||| | ||||||||| ||||||||||| |
|
|
| T |
15912898 |
agttgatgccgggttgcaagagggtgattgctcctcc |
15912934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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