View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16075_high_2 (Length: 613)

Name: NF16075_high_2
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16075_high_2
NF16075_high_2
[»] chr2 (2 HSPs)
chr2 (20-575)||(199384-199939)
chr2 (322-386)||(23485479-23485543)
[»] chr3 (3 HSPs)
chr3 (322-386)||(35712895-35712959)
chr3 (26-69)||(23273275-23273318)
chr3 (425-459)||(1079255-1079289)
[»] chr7 (1 HSPs)
chr7 (322-386)||(13385235-13385299)
[»] chr4 (2 HSPs)
chr4 (26-69)||(56015609-56015652)
chr4 (426-459)||(32062979-32063012)
[»] chr5 (1 HSPs)
chr5 (425-459)||(24141817-24141851)
[»] chr8 (1 HSPs)
chr8 (240-293)||(33608531-33608584)


Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Original strand, 199384 - 199939
Alignment:
Q  20 gtcccttcctacatccaccatttttcaacaccaaacaacaacaaattcattataacaatttcaattttcttcatcaaattcatcataaatcaatcaccta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  199384 gtcccttcctacatccaccatttttcaacaccaaacaacaacaaattcatcataacaatttcaattttcttcatcaaattcatcataaatcaatcaccta 199483  T
Q  120 gatcgaagaagtaaacgaacctagtaaacaacaactgagaaacaaacaaactcagaggtagcagaggatctgtacaaagcctcagtttctgccgacacca 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  199484 gatcgaagaagtaaacgaacctagtaaacaacaactgagaaacaaacaaactcagaggtaacagaggatctgtacaaagcctcagtttctgccgacgcca 199583  T
Q  220 ctaccagcgcaccgccatcgctcttccggtacaaaaacacgtgtttgttgttttcttatttctgatttgtgtttcttgtttcaaatctctttccatttca 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  199584 ctaccagcgcaccgccatcgctcttccggtacaaaaacacgtgtttgttgttttcttatttctgatttgtgtttcttgtttcaaatctctttccatttcg 199683  T
Q  320 cgacccaaaatttccagagctttgagggttaggaggtgtgaatcttattttctagctgtgttactttcgatcaatcattagcgttgttgttcttttgctt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  199684 cgacccaaaatttccagagctttgagggttaggaggtgtgaatcttattttctagctgtgttactttcgatcaatcattagcattgttgttcttttgctt 199783  T
Q  420 ttcgatcaattcagtttcagctttcaatttcatcttccaatttgttttcccaaatcacgaacaaaatagataacactgcacaatacagaggtaagcgtcg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  199784 ttcgatcaattcagtttcagctttcaatttcatcttccaatttgttttcccaaatcacgaacaaaatagataacactgcacaatacaaaggtaagcgtcg 199883  T
Q  520 atgcccagaattggaggaagtgttgttggtgttgggtacggtagataagaagaaga 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  199884 atgcccagaattggaggaagtgttgttggtgttgggtacggtagagaagaagaaga 199939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 23485479 - 23485543
Alignment:
Q  322 acccaaaatttccagagctttgagggttaggaggtgtgaatcttattttctagctgtgttacttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||    
T  23485479 acccaaaatttccagagctttgagggttaggaggtgtgaatcttgtttcccacctgtgttacttt 23485543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 35712895 - 35712959
Alignment:
Q  322 acccaaaatttccagagctttgagggttaggaggtgtgaatcttattttctagctgtgttacttt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||    
T  35712895 acccaaaatttccagagctttgagggttaggaggtgtgaatcttgtttcccacctgtgttacttt 35712959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 23273275 - 23273318
Alignment:
Q  26 tcctacatccaccatttttcaacaccaaacaacaacaaattcat 69  Q
    ||||| |||||||||||| |||||||||||||||||||||||||    
T  23273275 tcctatatccaccattttccaacaccaaacaacaacaaattcat 23273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 459
Target Start/End: Complemental strand, 1079289 - 1079255
Alignment:
Q  425 tcaattcagtttcagctttcaatttcatcttccaa 459  Q
    |||||||||||||||||||| ||||||||||||||    
T  1079289 tcaattcagtttcagctttcgatttcatcttccaa 1079255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 13385299 - 13385235
Alignment:
Q  322 acccaaaatttccagagctttgagggttaggaggtgtgaatcttattttctagctgtgttacttt 386  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||| | | ||||||||||||    
T  13385299 acccaaactttccagagctttgagggttaggaggtgtgaatcttgtttcccacctgtgttacttt 13385235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 56015652 - 56015609
Alignment:
Q  26 tcctacatccaccatttttcaacaccaaacaacaacaaattcat 69  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||    
T  56015652 tcctatatccaccattttccaacaccaaacaacaataaattcat 56015609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 459
Target Start/End: Original strand, 32062979 - 32063012
Alignment:
Q  426 caattcagtttcagctttcaatttcatcttccaa 459  Q
    ||||||||||||||||||| ||||||||||||||    
T  32062979 caattcagtttcagctttccatttcatcttccaa 32063012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 459
Target Start/End: Original strand, 24141817 - 24141851
Alignment:
Q  425 tcaattcagtttcagctttcaatttcatcttccaa 459  Q
    |||||||||||||||||||| ||||||||||||||    
T  24141817 tcaattcagtttcagctttcgatttcatcttccaa 24141851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 33608531 - 33608584
Alignment:
Q  240 ctcttccggtacaaaaacacgtgtttgttgttttcttatttctgatttgtgttt 293  Q
    |||||||| ||||||||||||||| | |||||||||| ||||||  ||||||||    
T  33608531 ctcttccgctacaaaaacacgtgtgtattgttttcttgtttctgggttgtgttt 33608584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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