View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_high_5 (Length: 477)
Name: NF16075_high_5
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 2698578 - 2699039
Alignment:
| Q |
1 |
acctcaaactgtcaaatgattcatatctatatcaactgtacatcaacgatggtgacgatattgatcaaccattttaaaagaaatagcatcacgtcacaaa |
100 |
Q |
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| T |
2698578 |
acctcaaactgtcaaatgattcatacctatatcaactatacatcaatgacggtgacgatatcgatcaactattttaaacgaaatagtatcacgtcacaaa |
2698677 |
T |
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| Q |
101 |
cctagacaatttgaacagaggttttgagaattaagtgccgatattagtaatggtgtt----attaatgaatataat-attcaattcatttatgttactaa |
195 |
Q |
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| T |
2698678 |
cctagacaatttgaacggaagttttgagaatttagtgtcgatattagtaatggtgttattaattaatggatataatgattcaattcatttatgttaccaa |
2698777 |
T |
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| Q |
196 |
tcatccattttgataaatctgaataatttacttatcatatttcttggccaaatgtttaaaactttcctattattattataatttannnnnnnacaccgac |
295 |
Q |
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| T |
2698778 |
atatccattttgacaaatctgaataatttacttatcatatttcttggccaaatgtttaaaactttcctattattattataattta-ttttttacaccgac |
2698876 |
T |
|
| Q |
296 |
ttattacttgaaaataggttgcactctagcaatgttagtttagagtcgggcatgttttgcgtagaaattggaaag-nnnnnnntatgattgaagtattga |
394 |
Q |
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| T |
2698877 |
ttattacttgaaaataggttgcactctagcaatgttagtttagagtcaggcatgttttgcatagaaattggaaagaaaaacaatatgattgaagtactga |
2698976 |
T |
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| Q |
395 |
accatactcaaaattctttcttaatatattttgaagtaagagatattttgcatgacaagcattt |
458 |
Q |
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| T |
2698977 |
accatgcttaaaattcattctt-atatattttgaattaagacatattttgcatgacaagcattt |
2699039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 2701213 - 2701289
Alignment:
| Q |
294 |
acttattacttgaaaataggttgcactctagcaatgttag-tttagagtcgggcatgttttgcgtagaaattggaaa |
369 |
Q |
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| T |
2701213 |
acttattatttgaaaataccttgaactctagcaatgatagatttagggttaggcatgttttgcatagaaattggaaa |
2701289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 2701093 - 2701129
Alignment:
| Q |
234 |
atttcttggccaaatgtttaaaactttcctattatta |
270 |
Q |
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| T |
2701093 |
atttcttggccaaatatttaaaactttgctattatta |
2701129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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