View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_high_6 (Length: 473)
Name: NF16075_high_6
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 7714315 - 7714761
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7714315 |
tggttggatgatgagaagaagatgcaaacctttttagctttcttgtgattggtcatcacttgtcacctcaggtcttccgtgttgaagtaattgagaaagt |
7714414 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7714415 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgct-------atccaaaatcacagcctt |
7714507 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714508 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacacccattgaacccagcctcccgatcagcttctcaatcatg |
7714607 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaagttttcagaggggattgt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7714608 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtgcaagttttcagaggggattgt |
7714707 |
T |
|
| Q |
400 |
gtccttaaaagatatatgatatggtttataaagatggcatcaaggaacaatagt |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7714708 |
gtccttaaaagatatatgatatggtttataaagatggcatcaaggaacaatagt |
7714761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 7481810 - 7481358
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||||| | ||||||| ||||||| ||||| |||||| ||||| |||| || ||| |||| |
|
|
| T |
7481810 |
tggttggatgatgagaagaagatgtaaaactttttagccttcttgttactggtcatgacttgtcgcctcaagtcttcagtgttaaagtcatcgagcaagt |
7481711 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7481710 |
catcggcatcatcaagagcatctttgagcttttccagccagagttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagcctt |
7481611 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7481610 |
gatctcagacatattctccaccagcttgtcaagatcatctctcatgttccagcattcaacaaccacagaacccagcttcccgatcagcttttcaatcatg |
7481511 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaagttttcagaggggattgt |
399 |
Q |
| |
|
||||||||||||| ||||||||||||| || ||||| ||||| || | | | |||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
7481510 |
ttgaacaaaagaccttcagccatttttttcgcaagtggatagaatgtgcgggattttgagagattgaatttacacggtacaagttttcagaggggatagt |
7481411 |
T |
|
| Q |
400 |
gtccttaaaagatatatgatatggtttataaagatggcatcaaggaacaatagt |
453 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
7481410 |
atccttaaaa-atatatgatatagtttataaagatgtcatcaaggaacaatagt |
7481358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 7527929 - 7527548
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||| |||||||| |
|
|
| T |
7527929 |
tggttggatgatgagaagaagatgcggacctttttagctttcttgtgattggtcatcacttgtcgcctcagttcttccgtgttgaagtaatcgagaaagt |
7527830 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7527829 |
catcggcatcatcaaaagcatctttgagattttccagccatagttgaacttgatggttgttggtgccctgctgctcttctgcatccaaaaccacagcctt |
7527730 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
7527729 |
gatctcagacatattctccaccagcttgtcaagatcatctctcatgttccagcattgaacaaccactgaacctagcttcccgatcagcttctcaatcatg |
7527630 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaa |
381 |
Q |
| |
|
||||||| || || |||||||||||||||||||||| |||| || | ||| ||| ||| |||||||||| ||||||||||| |
|
|
| T |
7527629 |
ttgaacagaataccttcagccatttttctcacaagtggataaggagtacaggcttatgatagattgaattcacacagtacaa |
7527548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 7129328 - 7129709
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||| ||||| |||| || || |||| |
|
|
| T |
7129328 |
tggttggatgatgagaagaagatgcgaacctttttagccttcttgtgattggtcatcacttgtcgcctcaagtcttcggtgttaaagtcatcaagcaagt |
7129427 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
|||||||||||| ||||||||| ||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7129428 |
catcggcatcatcaagagcatccttgagcttttccaaccagagttgaacttgatggttgttggctccctgctgctcctctgcatccaaaaccacagcctt |
7129527 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7129528 |
gatctcagacatattttccaccagcttttgaagatcatctctcatgttccagctttcaacaaccactgaacccagcttcccgatcagcttgtcaatcatg |
7129627 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaa |
381 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| |||| || |||||||| |||| ||||| |||| ||||||||||| |
|
|
| T |
7129628 |
ttgaacaaaagaccttcagccatttttctcagaagtggataaggaacacaagcttttgaaagattaaattcacacagtacaa |
7129709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 7722602 - 7722983
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||| | ||||||| ||||||| ||||| |||||| ||||| |||| || || | || |
|
|
| T |
7722602 |
tggttggatgatgagaagaagatgcaaaactttttagccttcttgttactggtcatcacttgtcgcctcaagtcttcagtgttaaagtcatcaagcacgt |
7722701 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7722702 |
catcggcatcatcaagagcatctttgagattttcaagccagagttgaacttgatggttgttggttccctgctgctcctctgcatccaaaaccacagcctt |
7722801 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | ||||||||||||||||||||| | |||||||||| | || |||||| ||||||||||||| ||||||||| |
|
|
| T |
7722802 |
gatctcagacatattctccaccagcttttgaagatcatctctcatgttccacccttcaacaaccgtggagcccagcttcccgatcagcttatcaatcatg |
7722901 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaa |
381 |
Q |
| |
|
|| |||| ||| | |||||||||||||||| ||||| |||| || ||| ||| |||| |||||||||| ||||||||||| |
|
|
| T |
7722902 |
ttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaattcacacagtacaa |
7722983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 7494212 - 7493836
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||||| || |||| ||||| |||||| ||||| |||| || ||| |||| |
|
|
| T |
7494212 |
tggttggatgatgagaagaagatgtgaaactttttagccttcttgttactggtcatcacctgtcgcctcaagtcttccgtgttaaagtcatcgagcaagt |
7494113 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||| ||| |||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
7494112 |
catcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagcctt |
7494013 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7494012 |
gatctcagacatattctccaccagcttttgaagatcatctctcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatg |
7493913 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacag |
376 |
Q |
| |
|
|| |||| ||| | |||||||||||||||| ||||| |||| || ||| ||| |||| |||||||||| |||||| |
|
|
| T |
7493912 |
ttaaacagaagtccttcagccatttttctctcaagtggataaggagcaatggcttttgatagattgaattcacacag |
7493836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 7519879 - 7519496
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| ||||||| | |||||| ||||||| ||||| |||||| |||||||||| || || |||| |
|
|
| T |
7519879 |
tggttggatgatgagaagaagatgtgaaactttttagccttcttgttacaggtcatcacttgtcgcctcaagtcttcggtgttgaagtcatcaagcaagt |
7519780 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgctcctctgcatccaaaatcacagcctt |
199 |
Q |
| |
|
||||||||||| |||||||||||| || ||||||| ||| |||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
7519779 |
tatcggcatcatcaagagcatctttcagcttttccaaccacagttgaacttgatggttgttggttccttgctgctcctctgcatccaaaaccacagcctt |
7519680 |
T |
|
| Q |
200 |
gatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattgaacccagcctcccgatcagcttctcaatcatg |
299 |
Q |
| |
|
||||||| ||||||| ||||||| ||| | ||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
7519679 |
gatctcagacatattctccaccagcttttgaagatcatctctcatgttccagccttcaacaaccatagaacccagcttcccgatcagcttatcaatcatg |
7519580 |
T |
|
| Q |
300 |
ttgaacaaaagactttcagccat--ttttctcacaagttgatagggtgcacaagctattgagagattgaatttacacagtacaa |
381 |
Q |
| |
|
|| |||| ||| | ||||||||| ||||||| ||||| |||| || ||| ||| |||| |||||||||| ||||||||||| |
|
|
| T |
7519579 |
ttaaacagaagtccttcagccatttttttctctcaagtggataaggagcaatggcttttgatagattgaattcacacagtacaa |
7519496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 168 - 435
Target Start/End: Complemental strand, 7506352 - 7506101
Alignment:
| Q |
168 |
tgctgctcctctgcatccaaaatcacagccttgatctcatacatattatccaccatcttgtcaagatcatctctcatgttccagcattcaacaaccattg |
267 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||| |||| ||||||||||| |||||||||||| | |
|
|
| T |
7506352 |
tgctgctcctctgcatccaaaaccacagccttgatctcagacatattatccaccagctagtcaagatcttctcacatgttccagccttcaacaaccatag |
7506253 |
T |
|
| Q |
268 |
aacccagcctcccgatcagcttctcaatcatgttgaacaaaagactttcagccatttttctcacaagttgatagggtgcacaagctattgagagattgaa |
367 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||| |||| ||||| |||||||||||||||||||||| ||| |||| || |||| |
|
|
| T |
7506252 |
aacccagcttcccgatcagcttttgaatcatgttaaacagaagaccttcagccatttttctcacaagt------ggt----------atgagggactgaa |
7506169 |
T |
|
| Q |
368 |
tttacacagtacaagttttcagaggggattgtgtccttaaaagatatatgatatggtttataaagatg |
435 |
Q |
| |
|
||||||| ||||||||||| ||||||||| ||||||||| |||||||||||| | || |||||||||| |
|
|
| T |
7506168 |
tttacacggtacaagtttttagaggggatagtgtccttataagatatatgatttagtatataaagatg |
7506101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 7506476 - 7506351
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgtgattggtcat-acttgtcacctcaggtcttctgtgttgaagtaattgagaaagt |
99 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| ||||||| | ||||||| ||||||| ||||| |||||| |||||||||| || ||| |||| |
|
|
| T |
7506476 |
tggttggatgatgagaagaagatgtgaaactttttagccttcttgttactggtcatcacttgtcgcctcaagtcttcggtgttgaagtcatcgagcaagt |
7506377 |
T |
|
| Q |
100 |
catcggcatcataaagagcatctttg |
125 |
Q |
| |
|
|||| ||||||| ||||||||||||| |
|
|
| T |
7506376 |
catcagcatcatcaagagcatctttg |
7506351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 16750721 - 16750834
Alignment:
| Q |
96 |
aagtcatcggcatcataaagagcatctttgagattttccagccatagttgaacttcatggttgttggctccctgctgct---cctctgcatccaaaatca |
192 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||| || |||| |||||||| || | || |||||||| |||||||| | | ||||||||||||| | |
|
|
| T |
16750721 |
aagtcatcagcatcatcaagagtatctttgagcttctccacccatagtttaattctatagttgttggggccctgctgttgttcttctgcatccaaaaccg |
16750820 |
T |
|
| Q |
193 |
cagccttgatctca |
206 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16750821 |
cagccttgatctca |
16750834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16750625 - 16750670
Alignment:
| Q |
1 |
tggttggatgatgagaagaagatgcgaacctttttagctttcttgt |
46 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||| ||||||| |
|
|
| T |
16750625 |
tggttggaagaggataagaagatgcgaacctttttagccttcttgt |
16750670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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