View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_high_8 (Length: 439)
Name: NF16075_high_8
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 53479587 - 53479775
Alignment:
| Q |
57 |
aatgcttgggagttaaggcaaggagatcatttgtcttctatatatcttgtttttattagccattgaaagatttaattctttgattcgtgcatcctcaaat |
156 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479587 |
aatgcttgagagttaaggcaaggagatcatttgtcttctatatatcttgtttttattagccattgaaagatttaattctttgattcgtgcatcctcaaat |
53479686 |
T |
|
| Q |
157 |
tttaggtgtataaggattttcaaattagtaatgtttagaattttcctattagagtttgctgatgacacgttgctgctatgtgaaaagag |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
53479687 |
tttaggtgtataaggattttcaaattagtaatgtttagaattttccttttagagtttgctgatggcacgttgctgctatgagaaaagag |
53479775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 253 - 421
Target Start/End: Original strand, 53479895 - 53480063
Alignment:
| Q |
253 |
cccatttaagtatttgtgtttgtcaattggagataatccaagtaggctgtcaatttttaaccgtgtgattgatagaattttagggaaattttatatgcgg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479895 |
cccatttaagtatttgtgtttgtcaattggagataatccaagtaggctgtcaatttttaaccgtgtgattgatagaattttagggaaattttatatgcgg |
53479994 |
T |
|
| Q |
353 |
aagtttcacaatttatccacaggagctcgtctcatttttctcgaagctgttattttgtgttactgatgt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
53479995 |
aagtttcacaatttatccacaggagctcgtctcatttttctcgaagcttctattttgtgttactaatgt |
53480063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University