View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16075_low_1 (Length: 651)

Name: NF16075_low_1
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16075_low_1
NF16075_low_1
[»] chr2 (1 HSPs)
chr2 (1-634)||(708496-709130)


Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 634
Target Start/End: Original strand, 708496 - 709130
Alignment:
Q  1 tgaaaccaacatttcattcttttggcgtgatcaatgtgcttcagttagttgtagcttgttattggtggtgttgtatagaag---tacaaaggttgtaaga 97  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||   ||||| ||||||||||    
T  708496 tgaaaccaacatttcattctttggacgtgatcaatgtgcttcagttagttgtagcttgttattggtggtgttgaatagaagaagtacaa-ggttgtaaga 708594  T
Q  98 agtcatcagaatctttttataactgatagtttaatannnnnnngtcctctatcatgttaatttttgtagcaacaatcttgtagaatactaacaacttctt 197  Q
    ||||||||||||||||||| ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  708595 agtcatcagaatctttttagaactgatagtttaatatttttt-gtcctctatcatgttaatttttgtagcaacaatcttgtagaatagtaacaacttctt 708693  T
Q  198 ccctttgttcatcacttaattctgtggggaagtcaatgaggaatttgacatgaaggtgacctcttgtgctgttatttttggggtttggcattcctcgacc 297  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  708694 ccctttgttcatcacttaattctgtgggcaagtcaatgaggaatttgacatgaaggtcacctcttgtgctgttatttttggggtttggcattccttgacc 708793  T
Q  298 ttcaataaccttctcaaaaccaggatatatgacagtattctcaaatgctaaattcattttttcacctcctaatagaggaattggcatggagcaccctgca 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  708794 ttcaataaccttctcaaaaccaggatatatgacagtattctcaaatgctaaattcattttttcacctcctaatagaggaattggcatggagcaccctgca 708893  T
Q  398 agtgcatctaatagaggaatcctaacacaaatttccaaatcatttccatttctgctaaacaaatggtgttccttttcatcaattaagaatactatatcag 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  708894 agtgcatctaatagaggaatcctaacacaaatttccaaatcatttccatttctgctaaacaaatggtgttccttttcatcaattaagaatactatatcag 708993  T
Q  498 cagggaggtaaccaggtttctcatcacctactccctcaaatgtaatctttgttccttttctccatcctggcttcacttcaatttttaaaatttcctcttc 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  708994 cagggaggtaaccaggtttctcatcacctactccctcaaatgtaatctttgttccttttctccatcctggcttcacttcaatttttaaaatttcctcttc 709093  T
Q  598 ctggataatcaccctgttgcaaaatttagttagtcat 634  Q
    |||||||||||||||||||||||||||||||||||||    
T  709094 ctggataatcaccctgttgcaaaatttagttagtcat 709130  T

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