View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16075_low_12 (Length: 327)

Name: NF16075_low_12
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16075_low_12
NF16075_low_12
[»] chr4 (22 HSPs)
chr4 (1-311)||(44924806-44925115)
chr4 (16-97)||(35748551-35748632)
chr4 (16-100)||(31092390-31092474)
chr4 (260-311)||(6908833-6908884)
chr4 (20-93)||(22787278-22787351)
chr4 (16-96)||(32871717-32871797)
chr4 (19-96)||(32058263-32058340)
chr4 (16-96)||(12592943-12593023)
chr4 (20-89)||(44121120-44121189)
chr4 (237-311)||(6901367-6901442)
chr4 (37-99)||(45511442-45511504)
chr4 (19-65)||(52378959-52379005)
chr4 (16-97)||(10376130-10376211)
chr4 (16-97)||(54221944-54222025)
chr4 (34-92)||(12706286-12706344)
chr4 (19-92)||(32556489-32556563)
chr4 (3-89)||(56215693-56215779)
chr4 (16-96)||(51377180-51377261)
chr4 (16-89)||(52697584-52697656)
chr4 (28-96)||(1015092-1015160)
chr4 (73-101)||(11493242-11493270)
chr4 (20-96)||(16531832-16531908)
[»] chr8 (12 HSPs)
chr8 (21-97)||(14127354-14127430)
chr8 (8-95)||(1775403-1775490)
chr8 (16-94)||(37568399-37568477)
chr8 (23-92)||(39199887-39199956)
chr8 (19-95)||(4721835-4721911)
chr8 (16-96)||(26628997-26629077)
chr8 (3-96)||(37521971-37522064)
chr8 (16-96)||(33938368-33938448)
chr8 (19-68)||(3155929-3155978)
chr8 (19-96)||(28434548-28434625)
chr8 (16-89)||(30170627-30170700)
chr8 (20-97)||(43066481-43066558)
[»] chr7 (22 HSPs)
chr7 (16-95)||(47925440-47925519)
chr7 (16-96)||(11503465-11503545)
chr7 (16-79)||(49094641-49094704)
chr7 (17-97)||(6427316-6427395)
chr7 (34-96)||(6892522-6892584)
chr7 (1-95)||(48314254-48314348)
chr7 (16-89)||(2005657-2005731)
chr7 (19-93)||(7714730-7714804)
chr7 (16-97)||(22588848-22588929)
chr7 (16-95)||(16829573-16829652)
chr7 (1-80)||(24957097-24957176)
chr7 (8-89)||(37855074-37855155)
chr7 (16-96)||(48395345-48395425)
chr7 (20-59)||(8352882-8352921)
chr7 (16-95)||(16953999-16954078)
chr7 (1-68)||(23816369-23816436)
chr7 (50-92)||(45606953-45606995)
chr7 (20-57)||(2849446-2849483)
chr7 (25-98)||(41750217-41750290)
chr7 (16-89)||(42663310-42663383)
chr7 (16-97)||(45256618-45256699)
chr7 (19-95)||(7212552-7212628)
[»] chr6 (7 HSPs)
chr6 (16-96)||(11113902-11113982)
chr6 (16-91)||(10840821-10840896)
chr6 (16-87)||(20029362-20029433)
chr6 (8-97)||(31204697-31204786)
chr6 (1-64)||(38682-38743)
chr6 (19-96)||(25109149-25109226)
chr6 (20-89)||(34019824-34019893)
[»] chr2 (20 HSPs)
chr2 (1-95)||(9366004-9366098)
chr2 (16-94)||(14151652-14151730)
chr2 (19-95)||(40106704-40106780)
chr2 (16-97)||(31629707-31629788)
chr2 (20-100)||(13453839-13453919)
chr2 (16-96)||(40602273-40602354)
chr2 (6-97)||(30416456-30416547)
chr2 (6-92)||(30415107-30415193)
chr2 (1-96)||(45376107-45376202)
chr2 (35-96)||(39233641-39233702)
chr2 (19-65)||(28544129-28544175)
chr2 (25-89)||(43820636-43820700)
chr2 (16-91)||(15123825-15123900)
chr2 (20-95)||(22966893-22966968)
chr2 (16-93)||(15610725-15610802)
chr2 (16-89)||(32900221-32900294)
chr2 (16-89)||(34432392-34432465)
chr2 (71-104)||(37966358-37966391)
chr2 (6-94)||(30413520-30413607)
chr2 (34-90)||(37468158-37468214)
[»] chr5 (9 HSPs)
chr5 (16-92)||(5740449-5740525)
chr5 (6-96)||(35474473-35474563)
chr5 (19-97)||(35570916-35570994)
chr5 (16-100)||(5899770-5899854)
chr5 (3-89)||(35475904-35475990)
chr5 (19-95)||(26754527-26754603)
chr5 (23-97)||(4800387-4800461)
chr5 (16-96)||(844136-844216)
chr5 (16-96)||(30838253-30838333)
[»] chr3 (14 HSPs)
chr3 (3-98)||(38017806-38017899)
chr3 (8-96)||(47187408-47187496)
chr3 (260-311)||(202101-202152)
chr3 (4-92)||(38910491-38910579)
chr3 (237-311)||(206947-207022)
chr3 (16-92)||(6977017-6977093)
chr3 (1-89)||(39901676-39901763)
chr3 (1-96)||(34102964-34103059)
chr3 (15-97)||(37073760-37073842)
chr3 (1-95)||(41851029-41851123)
chr3 (16-95)||(41448071-41448150)
chr3 (19-98)||(48335318-48335397)
chr3 (16-98)||(9326871-9326953)
chr3 (49-106)||(19961921-19961978)
[»] chr1 (16 HSPs)
chr1 (3-96)||(40809580-40809670)
chr1 (7-95)||(43891666-43891754)
chr1 (252-311)||(29514286-29514345)
chr1 (3-93)||(49804826-49804914)
chr1 (16-95)||(28501550-28501628)
chr1 (20-97)||(27804719-27804796)
chr1 (19-100)||(12021781-12021864)
chr1 (16-92)||(51231199-51231274)
chr1 (255-311)||(43625995-43626052)
chr1 (16-100)||(3904285-3904369)
chr1 (20-87)||(35883504-35883571)
chr1 (25-96)||(38519880-38519951)
chr1 (1-63)||(19476050-19476112)
chr1 (71-99)||(2533236-2533264)
chr1 (19-89)||(34453371-34453440)
chr1 (16-91)||(50777315-50777391)
[»] scaffold1625 (1 HSPs)
scaffold1625 (21-96)||(669-744)
[»] scaffold0295 (2 HSPs)
scaffold0295 (16-96)||(6031-6111)
scaffold0295 (16-96)||(3546-3626)
[»] scaffold0578 (1 HSPs)
scaffold0578 (1-63)||(6903-6965)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 44925115 - 44924806
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  44925115 tcttctttctctctgttgtttttatccaataagaagagaggaaaagtaattgtcacaaaagttgtctaggattagttgtacaaatatcattcctctaaaa 44925016  T
Q  101 ctatacttgttagtgtgaacgaaataaaagagaaatgtagagattatttctttacttaactttgaatagatcctcaattatatttttcacttgctgtatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44925015 ctatacttgttagtgtgaacgaaataaaagagaaatgtagagattatttctttacttaactttgaatagatcctcaattatatttttcacttgctgtatg 44924916  T
Q  201 cttatgggtccctagagttttgtttaannnnnnnnnctttctatttagtattaatgaaatatgtttgggaatggatgataatgtcatttttggtttcata 300  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44924915 cttatgggtccctagagttttgtttaa-ttttttttctttctatttagtattaatgaaatatgtttgggaatggatgataatgtcatttttggtttcata 44924817  T
Q  301 gggttgggagg 311  Q
    |||||||||||    
T  44924816 gggttgggagg 44924806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 35748632 - 35748551
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||| | ||| ||||||||||||||||    
T  35748632 ttgtttttatccattaagaaaagaggaaaagtagttgtcacaaaaattgtctaagattgatcgtagaaatatcattcctcta 35748551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 31092474 - 31092390
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||| || |||| ||||| |||||||||||||||| ||||||||    
T  31092474 ttgtttttatctaataagaaaagaggaaaagtgattgtcacaaaagttttctaagattgattgtacaaatatcatttctctaaaa 31092390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 260 - 311
Target Start/End: Complemental strand, 6908884 - 6908833
Alignment:
Q  260 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6908884 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 6908833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 22787278 - 22787351
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 93  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||| ||  || ||||||||||||||||||||    
T  22787278 ttttatccaataagaagagagaaaaaatggttgtctcaaaaattgtttaaaataggttgtacaaatatcattcc 22787351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 32871797 - 32871717
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||||||||| ||||||||||||||| |||||| || | ||||| || ||||| ||||||||||||| ||||||    
T  32871797 ttgtttttatccaataaaaagagaggaaaagtgattgtcaaaagagttgtcaagaattggatgtacaaatatcactcctct 32871717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 32058340 - 32058263
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||||||||||||||||||| |||||||| ||||| |||| ||  || | |||||||||||||| ||||||    
T  32058340 tttttatccaataagaagagaggaaaaatggttgtctcaaaagttgtttaaaatggattgtacaaatatcactcctct 32058263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 12593023 - 12592943
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||||||||||||||||||||| || || ||||| || ||||  | |||| |||||| |||||||||||||||    
T  12593023 ttgtttttatccaataagaagagaggaaaaatgattatcacacaagttgttcaagattagttgtataaatatcattcctct 12592943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 44121189 - 44121120
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||| ||  ||  |||||||||||||||    
T  44121189 ttttatccaataagaagagaggaaaaatggttgtctcaaaagttgtttaaaatgagttgtacaaatatca 44121120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 6901367 - 6901442
Alignment:
Q  237 ctttctatttagtattaatgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 311  Q
    ||||||||||||| ||  | |||||||| |||| |||||||||||||| | ||||||||||||||| |||||||||    
T  6901367 ctttctatttagtcttgttcaaatatgtctgggcatggatgataatgttattttttggtttcatagagttgggagg 6901442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 45511442 - 45511504
Alignment:
Q  37 agaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaa 99  Q
    ||||||||||||| |||||||||| |||| ||  ||||| ||||||||||||| |||||||||    
T  45511442 agaggaaaagtggatgtcacaaaagttgtttaaaattggatgtacaaatatcactcctctaaa 45511504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 52379005 - 52378959
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt 65  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  52379005 tttttatccaataaaaagagagaaaaagtggttgtcacaaaagttgt 52378959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 10376130 - 10376211
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||  |||||||| |||||  ||||| ||||||| |||| |||||| ||  ||||||||||||||||||| |||||||    
T  10376130 ttgttttagtccaataaaaagaggagaaaaatggttgttacaagaattgtatacaattggttgtacaaatatcactcctcta 10376211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 54222025 - 54221944
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||| |||||| | |||||| ||||| | |||||||| ||| |||||||  ||| ||||||||||||||| |||||||    
T  54222025 ttgtttttgtccaatcacaagagaagaaaaatagttgtcaccaaagttgtctaatattagttgtacaaatatcactcctcta 54221944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 12706286 - 12706344
Alignment:
Q  34 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||||||  |||||||| ||||| ||| ||  ||||||||||||||||||||||    
T  12706286 aagagaggaaaaaaggttgtcataaaaaatgtttaaaattggttgtacaaatatcattc 12706344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 32556563 - 32556489
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt-ctaggattggttgtacaaatatcattc 92  Q
    |||||||||||||| ||||||| |||||||||| |||||||| || | | |  ||||||| ||||||||||||||    
T  32556563 tttttatccaataaaaagagagaaaaagtggttatcacaaaagttatacaaaaattggttatacaaatatcattc 32556489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 56215693 - 56215779
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||||| | ||| |||| ||||||||||| |||| |||||||||||||| |||  ||||  |  |||| ||||||||||||||    
T  56215693 ttctttctctctattgattttgtccaataagaatagagaaaaagtggttgtcagaaaggttgtacaaaattgattgtacaaatatca 56215779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 51377261 - 51377180
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagt-ggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||  ||||||||||||||| ||||   ||||||||| ||| ||||| |||| ||| ||||||||||||||| ||||    
T  51377261 ttgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcaaggaatggatgtacaaatatcattgctct 51377180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 52697584 - 52697656
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||||| |||||| || |||| |||| | ||||||||||| ||||| ||  |||||||||||||||||||    
T  52697584 ttgtttttattcaataaaaatagagaaaaa-tagttgtcacaaagattgtttaaaattggttgtacaaatatca 52697656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 1015092 - 1015160
Alignment:
Q  28 aataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||| |||| ||||||||||| ||||||  ||||  |  ||||||||||||||||||||| ||||    
T  1015092 aataagaatagagaaaaagtggttgccacaaaggttgtacaaaattggttgtacaaatatcatttctct 1015160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 101
Target Start/End: Original strand, 11493242 - 11493270
Alignment:
Q  73 tggttgtacaaatatcattcctctaaaac 101  Q
    |||||||||||||||||||||||||||||    
T  11493242 tggttgtacaaatatcattcctctaaaac 11493270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 16531908 - 16531832
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||| |||||||| ||||   ||||||||||||||||||||||||| ||  |||  ||||||| |||||||| ||||    
T  16531908 ttttgtccaataaaaagaagagaaaagtggttgtcacaaaaattgtttaaaattaattgtacagatatcatttctct 16531832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 14127354 - 14127430
Alignment:
Q  21 tttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  14127354 tttatccaataagaagagaggaaaagtggttgtcacaaaagttgtttaggattggttgtacaaatatcattcctcta 14127430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 1775403 - 1775490
Alignment:
Q  8 tctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||| || ||||||||||||||||||| || |||| |||||||||||||| |||| || ||||||| ||||||||||||||||||    
T  1775403 tctctatattatttttatccaataagaagaaagaaaaaatggttgtcacaaaagttgtttaagattggtggtacaaatatcattcctc 1775490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 37568477 - 37568399
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcct 94  Q
    ||||||||||| |||||||| ||| ||||| |||||||||||||| ||||||| | |||||||||||||||||||||||    
T  37568477 ttgtttttatcgaataagaatagatgaaaaatggttgtcacaaaagttgtctaagcttggttgtacaaatatcattcct 37568399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 39199956 - 39199887
Alignment:
Q  23 tatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||||||| ||| |||||||||||||||||||| |||| || |||||||||||||||||||||||    
T  39199956 tatccaataagaatagaagaaaagtggttgtcacaaaagttgtttaagattggttgtacaaatatcattc 39199887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 4721835 - 4721911
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| ||  ||  ||||||||||||||| |||||    
T  4721835 tttttatccaataagaagagaggaaaagtggttgtctcaaaagttgtttaaaatgagttgtacaaatatcactcctc 4721911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26629077 - 26628997
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||| ||||||||||| | || ||||||||||||||||||  ||||  |  ||||||||||||||||||| ||||||    
T  26629077 ttgtttttgtccaataagaataaagaaaaagtggttgtcacaaatgttgtacaaaattggttgtacaaatatcactcctct 26628997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 37522064 - 37521971
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||| | || || || ||||||||||| | || |||| ||||||||||||||||||| ||  |||  || ||||||||||||||||||    
T  37522064 ttctttctctttattattcttgtccaataagaataaagaaaaaatggttgtcacaaaaattgtataaaattaattctacaaatatcattcctct 37521971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 33938448 - 33938368
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||| |||||||||||| |||| |  || ||| |||| |||| ||| |||| ||||| |||||||||||||||    
T  33938448 ttgtttttatccgataagaagagagaaaaaataattatcataaaagttgtatagaattgattgtataaatatcattcctct 33938368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 3155929 - 3155978
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtcta 68  Q
    |||||||||||||||||| |||||||| |||||||||  ||| |||||||    
T  3155929 tttttatccaataagaagtgaggaaaaatggttgtcaataaagttgtcta 3155978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 28434548 - 28434625
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||| |||||| ||||||||| || |||||||| ||||| |||| ||  ||  ||||||||||||||| ||||||    
T  28434548 tttttattcaataaaaagagaggataaatggttgtctcaaaagttgtttaaaatgagttgtacaaatatcactcctct 28434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 30170700 - 30170627
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||| |||||| | || ||  ||||| |||||||||| |||||||||||  ||| |||||||||||||||    
T  30170700 ttgtttttgtccaatcacaaaaggagaaaaatggttgtcaccaaaattgtctaaaattagttgtacaaatatca 30170627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 43066558 - 43066481
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||| |||||||||||||||| |||| ||| | ||||||| |||||  |  ||| ||||||||||||||| |||||||    
T  43066558 ttttgtccaataagaagagagaaaaaatggctatcacaaagattgtacaaaattagttgtacaaatatcactcctcta 43066481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 47925440 - 47925519
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47925440 ttgtttttatccgataagaagaaaggaaaagtggttgtcacaaaaattgtctagaattggttgtacaaatatcattcctc 47925519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11503545 - 11503465
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| || ||||| |||||| |||||||||||||||||||    
T  11503545 ttgtttttatccaacaagaagagagaaaaagtggttgtcacaaaagttttctagaattggtcgtacaaatatcattcctct 11503465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 49094704 - 49094641
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgt 79  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  49094704 ttgtttttatccaataagaaaagaggaaaagtggttgtcacaaaagttgtctaggattggttgt 49094641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 6427316 - 6427395
Alignment:
Q  17 tgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||||||||| | |||||||||||||||| ||||||||||| |||||||  |||| ||||||||||||||||||||||    
T  6427316 tgtttttatccaaga-gaagagaggaaaagtgcttgtcacaaaagttgtctaaaattgattgtacaaatatcattcctcta 6427395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 6892584 - 6892522
Alignment:
Q  34 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||| |||||| |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  6892584 aagagagaaaaagttgttgtcacaaaagttgtctatgattggttgtacaaatatcattcctct 6892522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 48314348 - 48314254
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||||||| |  |||||| ||||||||| |||||||  ||| ||||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  48314348 tcttctttctctttagtgttttgatccaataaaaagagagagaaaatggttgtcacaaagattgtttaagattgattgtacaaatatcattcctc 48314254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2005731 - 2005657
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcaca-aaaattgtctaggattggttgtacaaatatca 89  Q
    ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||  ||||  |||||||||||||    
T  2005731 ttgtttttatccaataaaaagagtggaaaagtggttgtcacaaaaaattgtctaaaattgaatgtacaaatatca 2005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 7714804 - 7714730
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 93  Q
    ||||||| |||||||||||||| |||| | ||||||||||||||||| ||| |||| ||||||||||| ||||||    
T  7714804 tttttattcaataagaagagagaaaaaatagttgtcacaaaaattgtttagaattgattgtacaaataccattcc 7714730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 22588929 - 22588848
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||| |||||| | || ||| |||||||||||||||| ||| |||||||  ||| ||||||||||||||| |||||||    
T  22588929 ttgtttttgtccaatcacaaaagaagaaaagtggttgtcaccaaagttgtctaatattagttgtacaaatatcactcctcta 22588848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 16829652 - 16829573
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||||||||||| | |||||  |||||||||||||||| ||| |||| ||  ||| ||||||||||||||| |||||    
T  16829652 ttgtttttatccaatcacaagaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16829573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24957176 - 24957097
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgta 80  Q
    |||||||||||| | || |||||||||||||  || ||||||||||||||||||| ||||  |||||| ||||| |||||    
T  24957176 tcttctttctctctattatttttatccaatataaaaagaggaaaagtggttgtcataaaagctgtctatgattgattgta 24957097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 37855074 - 37855155
Alignment:
Q  8 tctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    ||||||| || ||||||||||||||||| ||||||||| ||||||||  |||| |||| ||  || ||||||||||| ||||    
T  37855074 tctctatattctttttatccaataagaaaagaggaaaaatggttgtcttaaaagttgtttaaaataggttgtacaaacatca 37855155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 48395345 - 48395425
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||| ||||||   || ||| |||||||||||||||| || ||||||||  ||| ||||||||||||||| ||||||    
T  48395345 ttgtttttgtccaatctcaaaagaagaaaagtggttgtcaccaagattgtctaatattagttgtacaaatatcaatcctct 48395425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 8352882 - 8352921
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaa 59  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  8352882 ttttgtccaataagaagagagaaaaagtggttgtcacaaa 8352921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 16953999 - 16954078
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||||||||||| | || ||  |||||||||||||||| ||| |||| ||  ||| ||||||||||||||| |||||    
T  16953999 ttgtttttatccaatcacaaaaggagaaaagtggttgtcaccaaagttgtttaatattagttgtacaaatatcactcctc 16954078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23816369 - 23816436
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtcta 68  Q
    |||||| ||||| | ||||||||||||||||| || |||| |||||||||| ||| |||| |||||||    
T  23816369 tcttctctctctctattgtttttatccaataaaaaaagagaaaaagtggttttcaaaaaagttgtcta 23816436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 45606953 - 45606995
Alignment:
Q  50 ttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||    
T  45606953 ttgtcacaaaagttgtctaagattggttgtgcaaatatcattc 45606995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 2849483 - 2849446
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcaca 57  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  2849483 ttttgtccaataagaagagagaaaaagtggttgtcaca 2849446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 41750217 - 41750290
Alignment:
Q  25 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 98  Q
    |||||||||||||||||||||  ||||||||| |||||||| |    |||||||| ||||||||  ||||||||    
T  41750217 tccaataagaagagaggaaaaaaggttgtcactaaaattgtttgattttggttgttcaaatatcgctcctctaa 41750290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 42663383 - 42663310
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||| |||||| | |||||  |||||||||||||||| ||| |||||||  ||| | |||||||||||||    
T  42663383 ttgtttttgtccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatca 42663310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 45256699 - 45256618
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||| |||||| | || ||  |||||||||||||||| ||| |||||||  ||| | ||||||||||||| |||||||    
T  45256699 ttgtttttgtccaatcacaaaaggagaaaagtggttgtcaccaaagttgtctaatattagatgtacaaatatcaatcctcta 45256618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 7212628 - 7212552
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||||| || | ||||||  ||||||| ||||||| |||||||||||  | | ||||||||||||||| |||||    
T  7212628 tttttatcctatcacaagagaataaaagtgattgtcaccaaaattgtctaaaactagttgtacaaatatcaatcctc 7212552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 11113982 - 11113902
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  11113982 ttgtttatatccaataagaagagaggaaaagtggttatcacaaaagttgtttaggattggttgtacaaatatcattcctct 11113902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 10840821 - 10840896
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 91  Q
    |||||||||||||||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||||| ||||    
T  10840821 ttgtttttatccaataagaatagagaaaaagtggttgtcacaaaagttgtttagaattggttgtacaaataccatt 10840896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20029362 - 20029433
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatat 87  Q
    |||||| ||||||||||||||||| ||||||| |||||||| ||| |||| |||||||||||||||| ||||    
T  20029362 ttgtttatatccaataagaagagaagaaaagttgttgtcaccaaagttgtataggattggttgtacagatat 20029433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 31204786 - 31204697
Alignment:
Q  8 tctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||| ||||| |||| ||| |||||||||||| ||||||||||||||||||  ||||  |  |||| |||||||||||||| |||||||    
T  31204786 tctctctgttgattttgtccgataagaagagagaaaaagtggttgtcacaaaggttgtacaaaattgattgtacaaatatcactcctcta 31204697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38682 - 38743
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattg 64  Q
    |||||||||||| | || |||||||||||||||  ||||||||||||||||||| |||||||||    
T  38682 tcttctttctctctattctttttatccaataag--gagaggaaaagtggttgtctcaaaaattg 38743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 25109149 - 25109226
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||||| ||  ||||||||||||||||| ||||| |||| ||  ||   |||||||||||||| ||||||    
T  25109149 tttttatccaataaaaaaggaggaaaagtggttgtctcaaaagttgtttaaaatgaattgtacaaatatcactcctct 25109226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 34019893 - 34019824
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||| |||||||||||||||| |||||||||| |||||||  ||||  |  ||| |||||||||||||||    
T  34019893 ttttgtccaataagaagagagaaaaagtggttatcacaaaggttgtacaaaattagttgtacaaatatca 34019824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9366004 - 9366098
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| | ||||||| || ||||| ||||||||||||||||||||    
T  9366004 tcttctttctctctgttgtttttatccaataagaagagatgaaaagtagttgtcatagaaattgtttatgattgattgtacaaatatcattcctc 9366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 14151730 - 14151652
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcct 94  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||    
T  14151730 ttgtttttatccaataagaagagaggaaaagtggttgtcaaaaaagttgtctaagattagttgtacaaatatcattcct 14151652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 40106704 - 40106780
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  40106704 tttttattcaataagaagagagaaaaagtggttgtcacaaaagttgtctaggattgattgtacaaatatcattcctc 40106780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 31629707 - 31629788
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||||||||||||||||||||||||  ||||||||||||||| || ||||||| |||| |||||||||||||||||| ||||    
T  31629707 ttgtttttatccaataagaagagagagaaagtggttgtcacataagttgtctaagattagttgtacaaatatcattcttcta 31629788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 13453919 - 13453839
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    |||| |||||||||||||||| |||||||||||||||||||||||| ||  ||||||||||||||||||| ||||| ||||    
T  13453919 ttttgtccaataagaagagagaaaaagtggttgtcacaaaaattgtataaaattggttgtacaaatatcactcctcaaaaa 13453839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 40602354 - 40602273
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaa-gtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||||||||| || ||||||||| ||||||||||||||  || |||||||||||||||| |||||||||||||||    
T  40602354 ttgtttttatccaataaaaaaagaggaaaaagtggttgtcacaaatgttatctaggattggttgtataaatatcattcctct 40602273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 30416456 - 30416547
Alignment:
Q  6 tttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||| | |||||||| |||||||| || |||  |||| |||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  30416456 tttctctctattgtttttgtccaataaaaaaagaaaaaaaatggttgtcacaaaaattgtctaagatttgttttacaaatatcattcctcta 30416547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 30415107 - 30415193
Alignment:
Q  6 tttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||| |||||||| |||||||| || |||| |||| |||||||||||||| |||||||  ||| ||||||||||||||||||    
T  30415107 tttctctatattgtttttgtccaataataaaagagaaaaaatggttgtcacaaaagttgtctaaaatttgttgtacaaatatcattc 30415193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 45376202 - 45376107
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||| | || |||||||||||||||||| ||| ||||||||||||||||||  |||| ||  | | ||||||||||||||| ||||||    
T  45376202 tcttctttctctctattctttttatccaataagaagtgagaaaaagtggttgtcacaaaggttgtttaaaactagttgtacaaatatcactcctct 45376107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 39233702 - 39233641
Alignment:
Q  35 agagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||| || |||||||||||||||||||  |||  |||||||||||||||||||||    
T  39233702 agagaggaaaaatgattgtcacaaaaattgtctaaaattaattgtacaaatatcattcctct 39233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 28544129 - 28544175
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt 65  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  28544129 tttttatccaataaaaagagagaaaaagtggttgtcacaaaagttgt 28544175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43820700 - 43820636
Alignment:
Q  25 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    ||||||||||| | || |||||||||||||||||| ||| | ||  |||||||||||||||||||    
T  43820700 tccaataagaataaagaaaaagtggttgtcacaaagattatataaaattggttgtacaaatatca 43820636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 15123900 - 15123825
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 91  Q
    |||||||| |||||| | |||||  |||||||||||||||| |||||| || |  ||| |||||||||||||||||    
T  15123900 ttgtttttctccaatcataagaggagaaaagtggttgtcaccaaaattatcaaatattagttgtacaaatatcatt 15123825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 22966893 - 22966968
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||| |||||||||||||||| ||| ||| ||||||||||  ||||  |  ||||||||||||||||||| |||||    
T  22966893 ttttgtccaataagaagagagaaaatgtgattgtcacaaaggttgtacaaaattggttgtacaaatatcactcctc 22966968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 15610802 - 15610725
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 93  Q
    |||||||| |||||||| || |||| |||| || ||||||||||  ||||  |  |||||||||||||||||||||||    
T  15610802 ttgtttttgtccaataaaaatagagaaaaaatgtttgtcacaaaggttgtacaaaattggttgtacaaatatcattcc 15610725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 32900294 - 32900221
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    ||||| ||||||||||| |||||||||||| ||| | |||||||  ||||| |  ||| |||||||||||||||    
T  32900294 ttgttcttatccaataaaaagagaggaaaattggctatcacaaatgttgtccaaaattagttgtacaaatatca 32900221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 34432465 - 34432392
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||| |||||||| || |||| |||| ||||||||| |||| ||||  |  |||||||||||||||||||    
T  34432465 ttgtttttgtccaataaaaatagagaaaaaatggttgtcaaaaaagttgtacaaaattggttgtacaaatatca 34432392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 37966391 - 37966358
Alignment:
Q  71 attggttgtacaaatatcattcctctaaaactat 104  Q
    ||||||||||||||||||||| ||||||||||||    
T  37966391 attggttgtacaaatatcatttctctaaaactat 37966358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 30413520 - 30413607
Alignment:
Q  6 tttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcct 94  Q
    ||||||| | |||||||| ||||||||  | |||| |||| | |||||||||||| |||||||  |||  |||||||||||||||||||    
T  30413520 tttctctctattgtttttgtccaataaataaagagaaaaaatagttgtcacaaaagttgtctaaaatt-tttgtacaaatatcattcct 30413607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 37468214 - 37468158
Alignment:
Q  34 aagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcat 90  Q
    ||||||||||||  ||||||||||||| |||| |   ||||||||||||||||||||    
T  37468214 aagagaggaaaaaaggttgtcacaaaagttgtttcaaattggttgtacaaatatcat 37468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 5740449 - 5740525
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  5740449 ttgtttttatccaataagaagagaagaaaagtgattgtcacaaaagttgtttaggattggttgtacaaatatcattc 5740525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 35474473 - 35474563
Alignment:
Q  6 tttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||| | |||||||| |||||||| || |||| ||||||||||||||||||||||||  |  |||  |||||||||||||||||||||    
T  35474473 tttctctttattgtttttgtccaataaaaatagagaaaaagtggttgtcacaaaaattgtacaaaattaattgtacaaatatcattcctct 35474563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 35570916 - 35570994
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||||||||||||||||||||||| || ||||| ||||| |||| ||  ||  ||||||||||||||| |||||||    
T  35570916 tttttatccaataagaagagaggaaaaatgattgtctcaaaagttgtttaaaataagttgtacaaatatcactcctcta 35570994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 5899854 - 5899770
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    ||||| ||||||||||||||||||||||||  ||| ||||| |||||||| |    ||||||||  |||||||||||||||||||    
T  5899854 ttgttattatccaataagaagagaggaaaaaaggtagtcactaaaattgtttgattttggttgtcaaaatatcattcctctaaaa 5899770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 35475904 - 35475990
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||||| | || ||||| || |||||||| |||| |||||||||||||| ||||||||| ||  ||| ||| |||||||||||    
T  35475904 ttctttctctctattatttttgtctaataagaatagagaaaaagtggttgtcaaaaaaattgtataaaattagttatacaaatatca 35475990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 26754603 - 26754527
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||||||||||||||||||||||||||  ||||  |||| |||| ||  ||  ||||||||||||||| |||||    
T  26754603 tttttatccaataagaagagaggaaaagtgaatgtcttaaaagttgtttaaaatgagttgtacaaatatcactcctc 26754527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 4800461 - 4800387
Alignment:
Q  23 tatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||||||||||||||||||| || ||||||| | | |||||||   || ||| ||||||||||| |||||||    
T  4800461 tatccaataagaagagaggaaaaatgattgtcactatagttgtctaaatttagttatacaaatatcactcctcta 4800387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 844136 - 844216
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||| |||||| | || ||  |||||||| ||||||| ||| |||||||  ||| ||||||||||||||| ||||||    
T  844136 ttgtttttgtccaatcacaaaaggagaaaagtgattgtcaccaaagttgtctaatattagttgtacaaatatcactcctct 844216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 30838333 - 30838253
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||||||||| |||||  ||||||| ||||| |||| | ||||  |  ||||| ||||||||||||| ||||||    
T  30838333 ttgtttttatccaataaaaagaggagaaaagtagttgtaacaagagttgtacaaaattggctgtacaaatatcactcctct 30838253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 38017899 - 38017806
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 98  Q
    ||||||||||||  |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| | | |||||||||||||||||||    
T  38017899 ttctttctctat--tgtttttatccaataagaagagagaaaaagtgattgtcacaaaaattgtctaagattgatcggacaaatatcattcctctaa 38017806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 47187496 - 47187408
Alignment:
Q  8 tctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||| ||| |||  |||||||||||||||||||||    
T  47187496 tctctatattgtttttatccagtaagaagagatgaaaagtggttgtcacaaaagttgtttagaattaattgtacaaatatcattcctct 47187408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 260 - 311
Target Start/End: Original strand, 202101 - 202152
Alignment:
Q  260 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  202101 tatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 202152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 38910579 - 38910491
Alignment:
Q  4 tctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||| | |||||||||||||||||||| |||||||||    |||||||||||||| | ||  ||||||||||||||||||||||    
T  38910579 tctttctctctattgtttttatccaataagaatagaggaaaaaatattgtcacaaaaattatttaaaattggttgtacaaatatcattc 38910491  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 207022 - 206947
Alignment:
Q  237 ctttctatttagtattaatgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 311  Q
    ||||||||||||| ||  | |||||||| |||| |||||||||||||| | |||||||||||||||||||||||||    
T  207022 ctttctatttagtcttgttcaaatatgtctgggcatggatgataatgttattttttggtttcatagggttgggagg 206947  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 6977017 - 6977093
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    |||||||||||||||||||| ||||||||| || || |||||||| ||||  | ||||  |||||||||||||||||    
T  6977017 ttgtttttatccaataagaaaagaggaaaaatgattatcacaaaagttgttcaagatttattgtacaaatatcattc 6977093  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 39901676 - 39901763
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatca 89  Q
    |||||||||||| | || |||||||||||||||||||||| ||||||||||| ||| ||| |||| ||  ||||| |||||| ||||||    
T  39901676 tcttctttctctctatt-tttttatccaataagaagagagaaaaagtggttgccaccaaagttgtttaaaattggatgtacatatatca 39901763  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34103059 - 34102964
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||| ||||||| | |||||||| | || ||| ||||||| |||||| ||||||||||||||||| ||  |||| || || |||||||||||||||    
T  34103059 tcttatttctctttattgtttttgttcattaaaaagagagaaaaagtagttgtcacaaaaattgtttaaaattgattatataaatatcattcctct 34102964  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 37073760 - 37073842
Alignment:
Q  15 gttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    ||||||||| |||||||| |||||  |||||||| |  |||| |||||| ||||  ||| |||||||||||||||||||||||    
T  37073760 gttgtttttgtccaataacaagagcagaaaagtgatgatcaccaaaattatctaatattagttgtacaaatatcattcctcta 37073842  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 41851029 - 41851123
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||||||| |  | |||||||| ||||| |||| ||||||||||||||||| |||| |||| |   |||||||||| ||||| ||||||||    
T  41851029 tcttctttctctctactatttttatctaataaaaagaaaggaaaagtggttgtcataaaatttgtttgcaattggttgtataaataacattcctc 41851123  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 41448150 - 41448071
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||||| ||| |||| ||||||| |||| || ||||||||||| |||||||  |||| ||||  ||||||||||||||    
T  41448150 ttgtttttgtccgataaaaagagagaaaaaatgattgtcacaaaagttgtctaaaattgattgtgtaaatatcattcctc 41448071  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 48335318 - 48335397
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 98  Q
    |||||||||||||| |||| || ||||||| || |||||||| |||||||   |||| ||||||||||||| | ||||||    
T  48335318 tttttatccaataaaaagaaagaaaaagtgattatcacaaaagttgtctaaagttggatgtacaaatatcacttctctaa 48335397  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 9326953 - 9326871
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaa 98  Q
    |||||||| |||||| | |||||  |||||||||||||||| ||| |||||||  |||   ||||||||||||| ||||||||    
T  9326953 ttgtttttttccaatcacaagaggagaaaagtggttgtcaccaaagttgtctaatattatatgtacaaatatcaatcctctaa 9326871  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 19961978 - 19961921
Alignment:
Q  49 gttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaactatac 106  Q
    ||||||||||||||||||||  | ||||||| ||||||||||| |||||  |||||||    
T  19961978 gttgtcacaaaaattgtctaaaagtggttgttcaaatatcatttctctactactatac 19961921  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 40809580 - 40809670
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||| | |||||||||||   ||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||    
T  40809580 ttctttctctctattgtttttatc---taagaagagaggaaaagtggttgtcacaatagttgtttaggattggttgtacaaatatcattcctct 40809670  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 43891754 - 43891666
Alignment:
Q  7 ttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    |||||| | |||||||||| ||||||||||||||||||||||  |||||||||| |||| |||||||||||||||||||||| ||||||    
T  43891754 ttctctctattgtttttattcaataagaagagaggaaaagtgactgtcacaaaagttgtttaggattggttgtacaaatatcgttcctc 43891666  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 29514286 - 29514345
Alignment:
Q  252 taatgaaatatgtttgggaatggatgataatgtcatttttggtttcatagggttgggagg 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29514286 taatgaaatatgtttgggaatggatgataatgtcatttttggtttcacagggttgggagg 29514345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 49804914 - 49804826
Alignment:
Q  3 ttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcc 93  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||||| |||||| || | ||| |||||||||||||||||||||||    
T  49804914 ttctttctctat--tgtttttatccaataaaaagagaggaaaagtggttgttacaaaagttatttagaattggttgtacaaatatcattcc 49804826  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 28501550 - 28501628
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctc 95  Q
    ||||||||||||||||| |||| ||||||| || || |||||||| |||| |||||||||||||||||||||||||||||    
T  28501550 ttgtttttatccaataa-aagaaaggaaaaatgattatcacaaaagttgtttaggattggttgtacaaatatcattcctc 28501628  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 27804796 - 27804719
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctcta 97  Q
    |||| |||||||| || |||| |||||||||||||||||| ||||| ||  ||||||||||||||||||| |||||||    
T  27804796 ttttgtccaataaaaatagagaaaaagtggttgtcacaaagattgtgtaaaattggttgtacaaatatcactcctcta 27804719  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 12021864 - 12021781
Alignment:
Q  19 tttttatccaataagaagagaggaaaagt--ggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    |||||||||||||| |||||||||||| |  ||||||| || || || || | |||||||||||||||||||||||||| ||||    
T  12021864 tttttatccaataaaaagagaggaaaattatggttgtcgcacaatttatccaagattggttgtacaaatatcattcctcaaaaa 12021781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 51231274 - 51231199
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattc 92  Q
    ||||||||||||| ||| || |||| ||||||||||| | |||||||| ||||| ||||||||||||||||| ||||    
T  51231274 ttgtttttatccattaaaaa-agagaaaaagtggttgactcaaaaattatctagaattggttgtacaaatataattc 51231199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 43625995 - 43626052
Alignment:
Q  255 tgaaatatgtttgggaatggatgataatgtca-tttttggtttcatagggttgggagg 311  Q
    ||||||| ||||||| |||||||||||||||| |||||| |||||||||||| |||||    
T  43625995 tgaaatacgtttggggatggatgataatgtcattttttgatttcatagggttaggagg 43626052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 3904285 - 3904369
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctctaaaa 100  Q
    |||||||| |||||| | |||||  ||||| |||||||||  |||||||||||   || ||||||||||||||| ||||||||||    
T  3904285 ttgtttttgtccaatcacaagaggagaaaattggttgtcatcaaaattgtctaattttagttgtacaaatatcactcctctaaaa 3904369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 35883571 - 35883504
Alignment:
Q  20 ttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatat 87  Q
    |||| |||||||| ||||||| ||||||||||||||||||  ||||  |  |||||||||||||||||    
T  35883571 ttttgtccaataaaaagagagaaaaagtggttgtcacaaaggttgtacaaaattggttgtacaaatat 35883504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 38519951 - 38519880
Alignment:
Q  25 tccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||| | || ||||||| |||||||||| ||| | ||  ||||||||||||||||||| ||||||    
T  38519951 tccaataagaataaagaaaaagtgattgtcacaaagattatataaaattggttgtacaaatatcactcctct 38519880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 19476112 - 19476050
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaatt 63  Q
    |||||||||| | | ||||||||||||||||| | |||  |||||||||||||||||| ||||    
T  19476112 tcttctttctttctattgtttttatccaataaaatgaggtgaaaagtggttgtcacaacaatt 19476050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 2533264 - 2533236
Alignment:
Q  71 attggttgtacaaatatcattcctctaaa 99  Q
    |||||||||||||||||||||||||||||    
T  2533264 attggttgtacaaatatcattcctctaaa 2533236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 34453440 - 34453371
Alignment:
Q  19 tttttatccaataagaagagaggaaaagtggttgtcacaaaaattgt-ctaggattggttgtacaaatatca 89  Q
    ||||||||||||||  ||||||  ||||||||||||||||||||||| | |  |||||||||| ||||||||    
T  34453440 tttttatccaataaatagagag--aaagtggttgtcacaaaaattgtacaaaaattggttgtataaatatca 34453371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 50777391 - 50777315
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaa-gtggttgtcacaaaaattgtctaggattggttgtacaaatatcatt 91  Q
    ||||||||| ||||||||||||||| ||||   ||||||||| |||||||||    ||||| |||||||||||||||    
T  50777391 ttgtttttaaccaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcatt 50777315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1625 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold1625
Description:

Target: scaffold1625; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 744 - 669
Alignment:
Q  21 tttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||    
T  744 tttatccaataagaagaaaggaaaagtggttgtcacaaaagttgtttagaattgcttgtacaaatatcattcctct 669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 6111 - 6031
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||||||||||||||||||||| |||||||||||||  |||| ||  ||||| ||||||||||||| ||||||    
T  6111 ttgtttttatccaataagaagagaggaaaaatggttgtcacaaatgttgtttaaaattggatgtacaaatatcactcctct 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 3626 - 3546
Alignment:
Q  16 ttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaattgtctaggattggttgtacaaatatcattcctct 96  Q
    |||||||||||||||||||||||||||||| ||| | |||||||  |||| ||  ||||  ||||||||||||| ||||||    
T  3626 ttgtttttatccaataagaagagaggaaaaatgggtatcacaaatgttgtttaaaattgaatgtacaaatatcactcctct 3546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6965 - 6903
Alignment:
Q  1 tcttctttctctatgttgtttttatccaataagaagagaggaaaagtggttgtcacaaaaatt 63  Q
    |||||||||| | | ||||||||||||||||| | |||  |||||||||||||||||| ||||    
T  6965 tcttctttctttctattgtttttatccaataaaatgaggtgaaaagtggttgtcacaacaatt 6903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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