View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_low_14 (Length: 318)
Name: NF16075_low_14
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35742744 - 35742448
Alignment:
| Q |
1 |
ataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35742744 |
ataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaaca |
35742645 |
T |
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| Q |
101 |
tctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatatattgtcgacctcctcccttgtaaggaattgacgtactctaaatttttaggattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35742644 |
tctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatatattgtcgac---ctcccttgtaaggaattgacgtactctaagtttttaggattt |
35742548 |
T |
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| Q |
201 |
gacttgtcaattccatctgatttctctgggtttgaaagattgcttgaacttcacttattgtttgttagattcgagcccggtgcattcgagagtcttattt |
300 |
Q |
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| T |
35742547 |
gacttgtcaattccacctgatttctctgggtttgaaagattgcttgaacttcacttattgtttgttagattcgagcccggtgcattcgagagtcttattt |
35742448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 35749109 - 35748816
Alignment:
| Q |
1 |
ataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaaca |
100 |
Q |
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|||||||| |||||||||| || |||||||||| || |||||| ||||||| |||| || |||||||||| | | ||| |||| |||||||||| |
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| T |
35749109 |
ataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattcctcagtacgtggattccgttcttgtctaggagggatattaaaca |
35749010 |
T |
|
| Q |
101 |
tctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatatattgtcgacctcctcccttgtaaggaattgacgtactctaaatttttaggattt |
200 |
Q |
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| T |
35749009 |
tctcgagcttttgaactacggaacacatgtcgatcaaatgccatatactgtc------ctcgcttgtaaggagttgacttacttcaaattttccggattt |
35748916 |
T |
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| Q |
201 |
gacttgtcaattccatctgatttctctgggtttgaaagattgcttgaacttcacttattgtttgttagattcgagcccggtgcattcgagagtcttattt |
300 |
Q |
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|||||||||||||| |||||||| || ||| ||||||||||| | |||||||||| ||||| ||||||| |||||||| | ||| ||||||||| |
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| T |
35748915 |
aacttgtcaattccacatgatttctgaggctttaaaagattgcttaatcttcacttatctaatgttacattcgagtccggtgcacttgagggtcttattt |
35748816 |
T |
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