View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_low_15 (Length: 313)
Name: NF16075_low_15
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 20479518 - 20479625
Alignment:
| Q |
21 |
tctgtctggacggattcgattagtctggggagttgttgtacttgattttttgaggccgttttttcggtgtcagttgaagcgcttttagagtgatcaaagt |
120 |
Q |
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| T |
20479518 |
tctgtctggacggattcgattagtctggggagttgttgtacttgattttttgaggccgttttttcggtgtcagttgaagcgcttttagagtgatcaaagt |
20479617 |
T |
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| Q |
121 |
tctgctgc |
128 |
Q |
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| T |
20479618 |
tctgctgc |
20479625 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 20479702 - 20479800
Alignment:
| Q |
205 |
ccctctgtacatttcctagttggtgtaggtgcttccgtcttaaaagggtgtgtagtggatgtttcggtcctaattttgtagctgatcttgtcctctctg |
303 |
Q |
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| T |
20479702 |
ccctctgtacatttcctagttggtgtatgtgtttcggtcttaaaagggtgtgtagtggatgtttcggtcctaattttgtagcctatcttgtcctctctg |
20479800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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