View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_low_16 (Length: 310)
Name: NF16075_low_16
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_16 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 43700776 - 43700488
Alignment:
| Q |
18 |
attgtatcaaaggatgggaatacaggaaattatacaagcttggctgaagctgtcaggaatgccccagatctgaacgaccaaccttacatcattcgtgttt |
117 |
Q |
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| T |
43700776 |
attgtatcaaaggatgggaatacaggaaattatacaagcttggctgaagctgttaagaatgccccagatttaagcgaccaaccttacatcattcgtgttt |
43700677 |
T |
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| Q |
118 |
tagcaggcatttatgaagagtacgttcttgttccatcaaataagactaatattaagctccttggtgatggttcaacccagacaatcattgtctatcacca |
217 |
Q |
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| T |
43700676 |
tagcgggcatttatgaagagtgcgttctcattccaccaaataagcctaatattaagctccttggtgatggttcaaaccagacaatcattgtttgtcacca |
43700577 |
T |
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| Q |
218 |
aaatggttccgtcgctactataggtatgctacctaattatttttattctcacttaacttccaattaattcattcattttctatatttgattct |
310 |
Q |
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| T |
43700576 |
aaatggttccgtcggtaccataggtatgcttcctaattattcttactctcacttaacttcc----aattcattcattttccatatttgattct |
43700488 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 227
Target Start/End: Complemental strand, 45519315 - 45519134
Alignment:
| Q |
46 |
attatacaagcttggctgaagctgtcaggaatgccccagatctgaacgaccaaccttacatcattcgtgttttagcaggcatttatgaagagtacgttct |
145 |
Q |
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| T |
45519315 |
attatacaagtgtgggtgaagctatcagaaatgcccctgattggagtcaccaaccttacatcgttcacgttttagcaggcatttatgaagaatacatctt |
45519216 |
T |
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| Q |
146 |
tgttccatcaaataagactaatattaagctccttggtgatggttcaacccagacaatcattgtctatcaccaaaatggttcc |
227 |
Q |
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| T |
45519215 |
cattccaccgagtaagattaatattaagctcctaggtcatggttcaaaccacacaatacttgttgctcaccaaaatggttcc |
45519134 |
T |
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