View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_low_17 (Length: 308)
Name: NF16075_low_17
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 53 - 265
Target Start/End: Complemental strand, 8733685 - 8733471
Alignment:
| Q |
53 |
tataatttgtttggatgaagagaaaataattaaattgagatnnnnnnnnnnnnn--taaaggaaaccaaacaaattgatatactgtttgaatagtaaata |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8733685 |
tataatttgtttggatgaagagaaaataattaaattgagataaaaaaaaacaaaaataaaggaaaccaaataaattgatatactgtttgaatagtaaata |
8733586 |
T |
|
| Q |
151 |
aatgaaacgaataaatgtttattttattttggcttatatgttcaaattgacatcgtaatatacccgaaaattgaaaaacgacatcgtaataaaataatat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8733585 |
aatgaaacgaataaatgtttattttattttggcttatatgttcaaattgacatcgtaatatacccgaaatttgaaaaacgacatcgtaataaaataatat |
8733486 |
T |
|
| Q |
251 |
acattcaactatatt |
265 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
8733485 |
acattcaactatatt |
8733471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 53 - 265
Target Start/End: Original strand, 25502222 - 25502436
Alignment:
| Q |
53 |
tataatttgtttggatgaagagaaaataattaaattgagatnnnnnnnnnnnnn--taaaggaaaccaaacaaattgatatactgtttgaatagtaaata |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25502222 |
tataatttgtttggatgaagagaaaataattaaattgagataaaaaaaaacaaaaataaaggaaaccaaataaattgatatactgtttgaatagtaaata |
25502321 |
T |
|
| Q |
151 |
aatgaaacgaataaatgtttattttattttggcttatatgttcaaattgacatcgtaatatacccgaaaattgaaaaacgacatcgtaataaaataatat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25502322 |
aatgaaacgaataaatgtttattttattttggcttatatgttcaaattgacatcgtaatatacccgaaatttgaaaaacgacatcgtaataaaataatat |
25502421 |
T |
|
| Q |
251 |
acattcaactatatt |
265 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25502422 |
acattcaactatatt |
25502436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University