View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_low_21 (Length: 233)
Name: NF16075_low_21
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 8811442 - 8811640
Alignment:
| Q |
17 |
gagatgttgaagtaaaaattcaaaaccactttatttaggactttggcggaaaacacggtatgcataggagttaaataaccaatcatatcaattcgcaatg |
116 |
Q |
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| T |
8811442 |
gagatgttgaagtaaaaattcaaaaccactttatttaggactttggcggaaaacacggtatgcataggagttaaataaccaatcatatcaattcgcaatg |
8811541 |
T |
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| Q |
117 |
caatcacgaggctttctctcgctagattcaacattatctgtgaaaatttctacgatacatagcaaaccttcaacgacccgactacctcaatacacttgc |
215 |
Q |
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| T |
8811542 |
caatcacgaggctttctctcgctagattcaacattatccgtgaaaatttctacgacacatagcaaaccttcaacgacccgactatctcaatacacttgc |
8811640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 42789785 - 42789918
Alignment:
| Q |
21 |
tgttgaagtaaaaattcaaaaccactttatttaggactttggcggaaaacacggtatgcataggagttaaataaccaatcatatcaattcgcaatgcaat |
120 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| | ||| || | |
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| T |
42789785 |
tgttgaagtaaaactccaaaaccactttatttaaaactttggcggaaaacacggtatgcataggcgttaagtaaccaatcatatcaatttgaaatacatt |
42789884 |
T |
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| Q |
121 |
cacgaggctttctctcgctagattcaacattatc |
154 |
Q |
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| T |
42789885 |
cgtgaggctttctcttgctagattcagcattatc |
42789918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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