View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16075_low_22 (Length: 223)

Name: NF16075_low_22
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16075_low_22
NF16075_low_22
[»] chr1 (4 HSPs)
chr1 (1-215)||(1240569-1240783)
chr1 (148-213)||(49762375-49762440)
chr1 (148-215)||(33735669-33735736)
chr1 (140-202)||(15102967-15103029)
[»] chr7 (3 HSPs)
chr7 (138-216)||(21828297-21828375)
chr7 (150-214)||(40351695-40351759)
chr7 (147-215)||(12177945-12178010)
[»] chr5 (3 HSPs)
chr5 (170-214)||(20017605-20017649)
chr5 (139-202)||(10325515-10325578)
chr5 (139-213)||(18626794-18626868)
[»] chr6 (4 HSPs)
chr6 (149-215)||(33344959-33345024)
chr6 (149-215)||(35121874-35121939)
chr6 (172-211)||(9815621-9815660)
chr6 (170-215)||(34329769-34329814)
[»] chr4 (7 HSPs)
chr4 (150-215)||(43515782-43515847)
chr4 (136-183)||(32554527-32554574)
chr4 (145-215)||(35372031-35372101)
chr4 (139-183)||(23870215-23870259)
chr4 (167-202)||(7853445-7853480)
chr4 (146-215)||(12320542-12320611)
chr4 (139-215)||(3643060-3643136)
[»] chr8 (3 HSPs)
chr8 (136-202)||(34142202-34142267)
chr8 (159-215)||(13236320-13236376)
chr8 (146-214)||(4350587-4350654)
[»] chr2 (3 HSPs)
chr2 (138-199)||(16547818-16547879)
chr2 (145-201)||(5164486-5164542)
chr2 (139-215)||(36186525-36186601)
[»] chr3 (3 HSPs)
chr3 (147-202)||(33510019-33510074)
chr3 (172-215)||(52704599-52704642)
chr3 (134-202)||(24252034-24252101)
[»] scaffold0074 (1 HSPs)
scaffold0074 (169-202)||(46944-46977)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 1240783 - 1240569
Alignment:
Q  1 cacttgccatcatttccttcttcactctccaccgtttcttccgaaggtacgtaccaaaacaaattaatctcagcatagttttgcatgcatgtgtgtatac 100  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1240783 cacttgccatcatttccttcttcactctctaccgcttcttccgaaggtacgcgccaaaacaaattaatctcatcatagttttgcatgcatgtgtgtatac 1240684  T
Q  101 tatcatggttttaaattgcaattgtgatcatagctatgcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaatt 200  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1240683 tatcatggttttaaattgcaattgtgatcacagctgcgcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaatt 1240584  T
Q  201 atcctaatatttttc 215  Q
    ||||| |||||||||    
T  1240583 atcctgatatttttc 1240569  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 49762375 - 49762440
Alignment:
Q  148 tcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttt 213  Q
    |||||||||| ||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  49762375 tcctaagatttttgatgccttggacgaaacaataaaattgtgtctttttaattattctaatatttt 49762440  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 33735669 - 33735736
Alignment:
Q  148 tcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    |||||| ||| |||||| |||||   |||||||||||||||||||||||||||||  ||||| |||||    
T  33735669 tcctaaaatttttggtgtcttgggtaaaacaataaaattgtgcccttttaattattttaatagttttc 33735736  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 15102967 - 15103029
Alignment:
Q  140 agggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattat 202  Q
    |||| |||||||||| || |||||||| | | ||||||||||||||||||  |||||||||||    
T  15102967 agggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgttcttttaattat 15103029  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 216
Target Start/End: Complemental strand, 21828375 - 21828297
Alignment:
Q  138 gcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttcg 216  Q
    |||||| ||||||||||||| |||||||||  | ||||| || |||||||| ||||||||||||| |||||||||||||    
T  21828375 gcagggccggtcctaagatttttggtgcctgaggcgaaagaaaaaaattgtacccttttaattattctaatatttttcg 21828297  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 214
Target Start/End: Original strand, 40351695 - 40351759
Alignment:
Q  150 ctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatattttt 214  Q
    |||||||| |||||| ||||||||||||||||||||| | ||||||||||||| ||||| |||||    
T  40351695 ctaagatttttggtgtcttggacgaaacaataaaattcttcccttttaattattctaattttttt 40351759  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 12178010 - 12177945
Alignment:
Q  147 gtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||||||| | |||||||| |||||||||   |||||||||||||| |||||||| |||||| |||||    
T  12178010 gtcctaagagttttggtgccctggacgaaa---taaaattgtgccctattaattattctaatagttttc 12177945  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 20017649 - 20017605
Alignment:
Q  170 gacgaaacaataaaattgtgcccttttaattatcctaatattttt 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  20017649 gacgaaacaataaaattgtgcccttttaattattctaatattttt 20017605  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 10325515 - 10325578
Alignment:
Q  139 cagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattat 202  Q
    ||||| |||| |||||||  |||||| | |||||||||||||||||||||||||||||||||||    
T  10325515 cagggtcggttctaagatatttggtgtcctggacgaaacaataaaattgtgcccttttaattat 10325578  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 18626868 - 18626794
Alignment:
Q  139 cagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttt 213  Q
    ||||| |||||||||| || |||||||| | | |||||||||||||||||| ||||||||||||  |||||||||    
T  18626868 cagggccggtcctaagttttttggtgccataggcgaaacaataaaattgtgtccttttaattattttaatatttt 18626794  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 33345024 - 33344959
Alignment:
Q  149 cctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||||    
T  33345024 cctaagatttttggtgccctggacgaaacaat-aaattatgcccttttaattattcaaatatttttc 33344959  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 35121874 - 35121939
Alignment:
Q  149 cctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||||    
T  35121874 cctaagatttttggtgccctggacgaaacaat-aaattatgcccttttaattattcaaatatttttc 35121939  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 9815621 - 9815660
Alignment:
Q  172 cgaaacaataaaattgtgcccttttaattatcctaatatt 211  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  9815621 cgaaacaataaaattgtgcccttttaattattctaatatt 9815660  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 34329769 - 34329814
Alignment:
Q  170 gacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||||||||||||||  ||||||||||||||| ||||||||||||    
T  34329769 gacgaaacaataaaatcatgcccttttaattattctaatatttttc 34329814  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 43515782 - 43515847
Alignment:
Q  150 ctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    |||||||| |||||| | ||| |||||||||||||||||||||||||| |||| |||||| |||||    
T  43515782 ctaagatttttggtgtcctgggcgaaacaataaaattgtgcccttttagttattctaatagttttc 43515847  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 32554527 - 32554574
Alignment:
Q  136 atgcagggacggtcctaagattcttggtgccttggacgaaacaataaa 183  Q
    |||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  32554527 atgcagggccggtcctaagatttttggtgccttggaagaaacaataaa 32554574  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 35372031 - 35372101
Alignment:
Q  145 cggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||| ||| ||| |||||||| ||||| |||||||||| ||||||| |||||| ||| ||||||||||||    
T  35372031 cggtcataaaatttttggtgccctggacaaaacaataaagttgtgccattttaaatattctaatatttttc 35372101  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 23870259 - 23870215
Alignment:
Q  139 cagggacggtcctaagattcttggtgccttggacgaaacaataaa 183  Q
    ||||| ||||||||||||| |||||||||||| ||||||||||||    
T  23870259 cagggccggtcctaagatttttggtgccttggccgaaacaataaa 23870215  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 202
Target Start/End: Complemental strand, 7853480 - 7853445
Alignment:
Q  167 ttggacgaaacaataaaattgtgcccttttaattat 202  Q
    |||||||||||||||||||||| |||||||||||||    
T  7853480 ttggacgaaacaataaaattgtacccttttaattat 7853445  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 12320611 - 12320542
Alignment:
Q  146 ggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||| |||||| |||||| | || || ||||||||||||||||| ||||||||||| | |||| |||||    
T  12320611 ggtccgaagatttttggtgtcctgaacaaaacaataaaattgtgctcttttaattattccaatagttttc 12320542  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 3643060 - 3643136
Alignment:
Q  139 cagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||| ||||||||| | |  ||||||| ||  |||||||||||||||||| | |||||||||| | ||||||||||    
T  3643060 cagggccggtcctaaaacttatggtgccctgagcgaaacaataaaattgtgtcattttaattattccaatatttttc 3643136  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 202
Target Start/End: Complemental strand, 34142267 - 34142202
Alignment:
Q  136 atgcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattat 202  Q
    |||||||| ||||||||||||| ||| |||  ||||||||||||| ||||||| |||||||||||||    
T  34142267 atgcagggccggtcctaagatttttgatgctctggacgaaacaat-aaattgtacccttttaattat 34142202  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 13236376 - 13236320
Alignment:
Q  159 ttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    |||||||| |||| |||||||||||||| |||| |||||||||| | ||||||||||    
T  13236376 ttggtgccctggatgaaacaataaaattatgccattttaattattccaatatttttc 13236320  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 4350587 - 4350654
Alignment:
Q  146 ggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatattttt 214  Q
    ||||||| |||| || ||| | |||||||||||||||| |||| |||||||||||||  ||||||||||    
T  4350587 ggtcctaggatttttcgtgtcctggacgaaacaataaa-ttgtacccttttaattattttaatattttt 4350654  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 16547879 - 16547818
Alignment:
Q  138 gcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaat 199  Q
    |||||| | ||||||||||| || ||||  |||||||||||||||||||||| |||||||||    
T  16547879 gcagggtcagtcctaagattttttgtgctctggacgaaacaataaaattgtgtccttttaat 16547818  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 5164542 - 5164486
Alignment:
Q  145 cggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaatta 201  Q
    ||||| ||||||| ||| | || |||||||||||||||||||||| |||||| ||||    
T  5164542 cggtcttaagatttttgataccctggacgaaacaataaaattgtgtcctttttatta 5164486  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 36186525 - 36186601
Alignment:
Q  139 cagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||| || |||||||||| |||||||| |  |||||||  ||||||| || |||||||||||| ||||| ||||||    
T  36186525 cagggtcgatcctaagatttttggtgccctaaacgaaacggtaaaattttgtccttttaattattctaatgtttttc 36186601  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 33510019 - 33510074
Alignment:
Q  147 gtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattat 202  Q
    ||||||||||| |||||| |  || |||||||||||||||||||| ||||||||||    
T  33510019 gtcctaagatttttggtgtccagggcgaaacaataaaattgtgccattttaattat 33510074  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 52704599 - 52704642
Alignment:
Q  172 cgaaacaataaaattgtgcccttttaattatcctaatatttttc 215  Q
    ||||| || |||||||||||||||||||||| ||||||||||||    
T  52704599 cgaaagaaaaaaattgtgcccttttaattattctaatatttttc 52704642  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 24252101 - 24252034
Alignment:
Q  134 ctatgcagggacggtcctaagattcttggtgccttggacgaaacaataaaattgtgcccttttaattat 202  Q
    |||| ||||| || |||||||| | |||||| | |||||||| ||||||||||||| ||||||||||||    
T  24252101 ctatccagggccgatcctaagactattggtgtcctggacgaatcaataaaattgtg-ccttttaattat 24252034  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 46977 - 46944
Alignment:
Q  169 ggacgaaacaataaaattgtgcccttttaattat 202  Q
    ||||||||||||||||||||| ||||||||||||    
T  46977 ggacgaaacaataaaattgtgtccttttaattat 46944  T

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