View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16075_low_3 (Length: 556)
Name: NF16075_low_3
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 8 - 540
Target Start/End: Complemental strand, 40208838 - 40208306
Alignment:
| Q |
8 |
cgaagaaaatatatagtaaataacattttttgaactactcctccaagaaataactggggagtgcnnnnnnnnnnnnnnnnnnnnnnnngtgtaatattgt |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40208838 |
cgaaaaaaatatatagtaaataacattttttgaactactcctccaagaaataactggggagtgcaaaaagaaaaaaataaaaataaaagtgtaatattgt |
40208739 |
T |
|
| Q |
108 |
gcatggctagtttcttcaaacttcagcacttnnnnnnnnnnnnnnntacgatcatcaccaatcaccaccaagttaccgttcctcttgttgatcacgttga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40208738 |
gcatggctagtttcttcaaacttcagcacttcacacacacacacactacgatcatcaccaatcaccaccaagttaccgttcctcttgttgatcacgttga |
40208639 |
T |
|
| Q |
208 |
tcacgagacgataaccgaaaaacccacttagtgagtaaatttctctttgtgctttttgttgtaacaccattaacattgccggtggactcaacaacgaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40208638 |
tcacgagacgataaccgaaaaacccacttagtgagtaaatttctctttgtgctttttgttgtaacaccattaacattgccagtggactcaacaacgaaag |
40208539 |
T |
|
| Q |
308 |
ctttcaaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccagg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40208538 |
ctttcaaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccagg |
40208439 |
T |
|
| Q |
408 |
tgaaatgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggattggagaagatgcctcatatcaacccaacaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40208438 |
tgaaatgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggaatggagaagatgcctcatatcaacccaacaa |
40208339 |
T |
|
| Q |
508 |
aataatcctgcattgctttccaagcagcttatt |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
40208338 |
aataatcctgcattgctttccaagcagcttatt |
40208306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 313 - 509
Target Start/End: Original strand, 5134013 - 5134209
Alignment:
| Q |
313 |
aaccttttcattgctagtttcaaagtctcttctgacatgtttgcgaaacacacacgaaaccaacctggttctgtacaatgacaagatgaaccaggtgaaa |
412 |
Q |
| |
|
||||||||||| |||| || || || |||||||||||||| || ||||| ||||||||||| || ||||| || |||||||| || | ||||||||||| |
|
|
| T |
5134013 |
aaccttttcatagctaagtttaatgtatcttctgacatgttagcaaaacaaacacgaaaccacccaggttcggtgcaatgacatgaagcaccaggtgaaa |
5134112 |
T |
|
| Q |
413 |
tgtttaaaccaacttggtacactattttcttccatagttccatttcagcttcaaatgtgttggattggagaagatgcctcatatcaacccaacaaaa |
509 |
Q |
| |
|
|||| || | ||| | | | | ||| ||||||||||| |||||||||||||||||||| || || | ||||| || |||||||||||||| ||||| |
|
|
| T |
5134113 |
tgttcaaccgaacatcgaataatatcttcttccatagctccatttcagcttcaaatgtatttgaattaagaaggtgtctcatatcaacccagcaaaa |
5134209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University