View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16075_low_9 (Length: 401)
Name: NF16075_low_9
Description: NF16075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16075_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 2781783 - 2782166
Alignment:
| Q |
1 |
ctttctacgtgctctgaagctggttctataagcaacaacggtatgaccaagagcaaacacaaccgacgaaagaaacagcacaggcattccccaagacttc |
100 |
Q |
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| T |
2781783 |
ctttctacgtgctctgcagctggttctataagcaacaacggtatgaccaagagcaaacacaaccgacgaaagaaacagcacaggcattccccaagacttc |
2781882 |
T |
|
| Q |
101 |
ttcaaatggagtctctgcctctttagagaagccaatgaagcttcagcttcaatctgggaatttacagtgaaaagacaagctttgactgaaaggagaataa |
200 |
Q |
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| T |
2781883 |
ttcaaatggagtctctgcctctttagagaagccaatgaagcttcagcttcaatctgggaatttacagtgaaaagacaagctttgactgaaaggagaataa |
2781982 |
T |
|
| Q |
201 |
ttgaggaaaaagaacatagagtcacagttccaaggtaaggaccgtgtgaaagagcagggccatcacaaattgaataaacacctgcaattaacagagaaaa |
300 |
Q |
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| T |
2781983 |
ttgaggaaaaagaacatagagtcacagttccaaggtaaggaccgtgtgaaagagcaggcccatcacaaattgaataaacacctgcaattaacagagaaaa |
2782082 |
T |
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| Q |
301 |
ataacccaacatcaaaatttataataaccacagaaaatccaattactatttctttctacatattctacccatgaaattcattct |
384 |
Q |
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| T |
2782083 |
ataacccaacatcaaaatttataataaccacagaaaatccaattactatttctttctacatattctacccatgaaattcattct |
2782166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 44293143 - 44292861
Alignment:
| Q |
1 |
ctttctacgtgctctgaagctggttctataagcaacaacggtatgaccaagagcaaacacaaccgacgaaagaaacagcacaggcattccccaagacttc |
100 |
Q |
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| T |
44293143 |
ctttctccttgctctgcagctggttctataagcaaccacgacatggccgagggcaaacacaactgacgagagaaataagacaggcattccccacgacttt |
44293044 |
T |
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| Q |
101 |
ttcaaatggagtctctgcctctttagagaagccaatgaagcttcagcttcaatctgggaatttacagtgaaaagacaagctttgactgaaaggagaataa |
200 |
Q |
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|||||||||||| | | ||| || ||| || |||||||| |||||||||| ||||| |||||||||| |||||||||||| ||||||| || || |
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| T |
44293043 |
ttcaaatggagtattttccttgcaagggaaacc---gaagcttccccttcaatctgagaattgacagtgaaaacacaagctttgacggaaaggacaacaa |
44292947 |
T |
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| Q |
201 |
ttgaggaaaaagaacatagagtcacagttccaaggtaaggaccgtgtgaaagagcagggccatcacaaattgaataaacacctgca |
286 |
Q |
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| T |
44292946 |
tcgaaacaaatgaacacagagtcactgttccaagataaggaccatgtgagagagcgggaccatcacaaattgaataaacacctgca |
44292861 |
T |
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