View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16076_high_3 (Length: 420)
Name: NF16076_high_3
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16076_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 44343552 - 44343955
Alignment:
| Q |
1 |
caaagctctaacaggtggtgaaaatagagacaaactgctaataatattctcagtcaatatctgaaaagaaagcaagaaaagatgcggtgttgcagaacgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343552 |
caaagctctaacaggtggtgaaaatagagacaaactgctaataatattctcagtcaatatctgaaaagaaagcaagaaaagatgcggtgttgcagaacgc |
44343651 |
T |
|
| Q |
101 |
acagcatgttgatcacctcttgcaaaccctccaagaacataagctagtggcaaaaacaagccaatagttgttccaacaataacatacattctgaacatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44343652 |
acagcatgttgatcacctcttgcaaaccctccaagaacataagctagtggcaaaaacaagccaatagttgttccaacaataatatacattctgaacatgc |
44343751 |
T |
|
| Q |
201 |
tacttcctttgaaaatctcttgttgttgtgaatttgatgtagtagaaggagatgatggaaatgcgtaacgtgcaagtgctaagatgtatgcagaggcaag |
300 |
Q |
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| T |
44343752 |
tacttacttggaaaatctcttgttgttgtgaatttgatgtagtagaaggagatgatggaaatgcgtaacgtgcaagtgctaagatgtatgcagaggcaag |
44343851 |
T |
|
| Q |
301 |
agctggaaaaactagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343852 |
agctggaaaaactagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatc |
44343951 |
T |
|
| Q |
401 |
attc |
404 |
Q |
| |
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|||| |
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| T |
44343952 |
attc |
44343955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 313 - 403
Target Start/End: Original strand, 39475151 - 39475241
Alignment:
| Q |
313 |
tagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatcatt |
403 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
39475151 |
tagatcaagaagagggacaagaccacttgctgagaaaaccaatacaaaggctacaagttgtagttctattacacgtaatgaacccatcatt |
39475241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 39474987 - 39475036
Alignment:
| Q |
137 |
acataagctagtggcaaaaacaagccaatagttgttccaacaataacata |
186 |
Q |
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||||||||||| ||||| ||||| |||| | ||||||||||||||||||| |
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| T |
39474987 |
acataagctagaggcaagaacaatccaagaattgttccaacaataacata |
39475036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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