View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16076_high_4 (Length: 360)
Name: NF16076_high_4
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16076_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 79 - 347
Target Start/End: Original strand, 7530662 - 7530926
Alignment:
| Q |
79 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |||| |
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| T |
7530662 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta |
7530755 |
T |
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| Q |
179 |
ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt |
278 |
Q |
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||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7530756 |
ggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaattt |
7530855 |
T |
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| Q |
279 |
ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
347 |
Q |
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||| ||||||||||||||||||||| || |||||||||||||| ||||||||||||||| ||||||||| |
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| T |
7530856 |
ctcatatttgttttataattataaattattatttatgttgtttttcatcatccataataatttactatgtt |
7530926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 113 - 348
Target Start/End: Original strand, 7503164 - 7503394
Alignment:
| Q |
113 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtcctttta-tcaagaatgata |
211 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||||||| | || |||||||| | |||||||||||| |
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| T |
7503164 |
tactatcatatcaagacttgatttttagctg----ttgacacttgttttttcatgtcttt--cttaggctgttgagatgtcctttgaatcaagaatgata |
7503257 |
T |
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| Q |
212 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgttttataattataaagaatttta |
311 |
Q |
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| T |
7503258 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtaagttctcttaaatttctcctatttgttttataattataaagaatttta |
7503357 |
T |
|
| Q |
312 |
tgttgttttttatcatccataataatctactatgttc |
348 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7503358 |
tgttgttttttatcatccataataatctactatgttc |
7503394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 79 - 347
Target Start/End: Original strand, 7496947 - 7497211
Alignment:
| Q |
79 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |||| |
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| T |
7496947 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta |
7497040 |
T |
|
| Q |
179 |
ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt |
278 |
Q |
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|| |||| |||||||||||| |||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
7497041 |
ggatgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacacaagaataataagtgtaagttctcttaaattt |
7497140 |
T |
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| Q |
279 |
ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
347 |
Q |
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||| |||||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||||| |
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| T |
7497141 |
ctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatatactatgtt |
7497211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 79 - 347
Target Start/End: Original strand, 7522605 - 7522869
Alignment:
| Q |
79 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttctta |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||| |||| |
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| T |
7522605 |
caataaggtaaataaattgttttgaatatattaatactatcatatcaagactgtatgtttagct----tttgacacttgttttgtcatgtcttt--ctta |
7522698 |
T |
|
| Q |
179 |
ggctgctaagttgtccttttatcaagaatgatagaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaattt |
278 |
Q |
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||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||| |
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| T |
7522699 |
ggctgctgagttgtccttttttcaatgatgatagaaggattataactactcaagtcaaagcccctacgcaagcataatcagtgtaagttctcttaaattt |
7522798 |
T |
|
| Q |
279 |
ctcctatttgttttataattataaagaat--tttatgttgttttttatcatccataataatctactatgtt |
347 |
Q |
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||| |||||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||||||| |
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| T |
7522799 |
ctcatatttgttttataattataaagtattatttatgttgttgttcatcatccataataatatactatgtt |
7522869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 7719832 - 7719601
Alignment:
| Q |
113 |
tactatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttt-tatcaagaatgata |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| | || |||||||| ||||||||||||| |
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| T |
7719832 |
tactatcatatcaagacttgattt----ttagcttttgacacttgttttttcatgtc--tttcttaggctgttgagatgtcctttgaatcaagaatgata |
7719739 |
T |
|
| Q |
212 |
gaaggatcgtaactactctagtcaaagcccctacacaagcataataagtgtaagttttcttaaatttctcctatttgtttta-taattataaagaatttt |
310 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7719738 |
gaaggattataactactcaagtcaaagcccctacacaagcataataagtgtcagatctcttaaatttctcctatttgttttattaattataaagaatttt |
7719639 |
T |
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| Q |
311 |
atgttgttttttatcatccataataatctactatgttc |
348 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
7719638 |
atgttgttgtttatcatccataataatctactatgttc |
7719601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 7126526 - 7126433
Alignment:
| Q |
116 |
tatcatatcaagacttgatttctagctagcttttgacacttgttttgtcatgtctttttcttaggctgctaagttgtccttttatcaagaatgatagaag |
215 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||| ||| || ||||||||||| |||||||||||| || ||||||||||||| |
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| T |
7126526 |
tatcatatcaagacttgatttctagct----tttgacaattgttttgtcaagtcatt--cttaggctgctgagttgtccttttttccagaatgatagaag |
7126433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 146
Target Start/End: Original strand, 7484565 - 7484647
Alignment:
| Q |
58 |
gtggaagatgaataggttctacaataaggtaaataaattgttttgaatatattaatactatcatatcaagacttgatttctagctagct |
146 |
Q |
| |
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|||||| || |||| ||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| |
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| T |
7484565 |
gtggaacatcaatacgttctacaacaaggtaaataaattgttttgaatatat------tatcatatcatgacatgatttctagctagct |
7484647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 7485988 - 7486061
Alignment:
| Q |
276 |
tttctcctatttgttttataattataaagaatt--ttatgttgttttttatcatccataataatctactatgtt |
347 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||| |||||||||| | |||||||||||||||||||||||| |
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| T |
7485988 |
tttctcatatttgttttacaattataaagtattatttatgttgttgctcgtcatccataataatctactatgtt |
7486061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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