View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16076_low_1 (Length: 462)

Name: NF16076_low_1
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16076_low_1
NF16076_low_1
[»] chr1 (5 HSPs)
chr1 (19-462)||(4260345-4260790)
chr1 (19-462)||(4263967-4264412)
chr1 (112-161)||(10129966-10130015)
chr1 (89-156)||(19490084-19490151)
chr1 (332-404)||(10129721-10129793)
[»] chr3 (5 HSPs)
chr3 (25-404)||(24219269-24219650)
chr3 (26-163)||(33997767-33997904)
chr3 (310-395)||(16350643-16350728)
chr3 (111-167)||(16350873-16350929)
chr3 (111-167)||(24226643-24226699)
[»] chr6 (45 HSPs)
chr6 (25-389)||(25450717-25451083)
chr6 (25-404)||(29882019-29882400)
chr6 (25-404)||(29909175-29909556)
chr6 (19-361)||(29928900-29929244)
chr6 (25-458)||(24271981-24272416)
chr6 (20-400)||(29886885-29887267)
chr6 (25-400)||(24263786-24264163)
chr6 (19-165)||(29946262-29946408)
chr6 (20-404)||(29348627-29349013)
chr6 (20-397)||(29866240-29866619)
chr6 (20-348)||(28926576-28926906)
chr6 (26-397)||(29834806-29835179)
chr6 (25-161)||(29905468-29905604)
chr6 (25-161)||(30118775-30118911)
chr6 (243-396)||(29902848-29903001)
chr6 (26-161)||(29894382-29894517)
chr6 (25-164)||(30127089-30127228)
chr6 (19-404)||(29098927-29099314)
chr6 (19-404)||(29115845-29116232)
chr6 (36-164)||(30060207-30060335)
chr6 (26-153)||(24890281-24890408)
chr6 (20-161)||(29358008-29358149)
chr6 (189-404)||(29073347-29073561)
chr6 (189-404)||(29105920-29106134)
chr6 (26-396)||(29366456-29366828)
chr6 (310-395)||(16702339-16702424)
chr6 (33-153)||(24730692-24730812)
chr6 (89-153)||(31000036-31000100)
chr6 (26-161)||(29897906-29898041)
chr6 (222-404)||(29894137-29894318)
chr6 (295-404)||(29358285-29358394)
chr6 (331-397)||(24890588-24890654)
chr6 (20-161)||(29073592-29073733)
chr6 (20-161)||(29078356-29078497)
chr6 (189-402)||(29084604-29084816)
chr6 (20-161)||(29106165-29106306)
chr6 (19-164)||(29876651-29876796)
chr6 (189-326)||(29897739-29897875)
chr6 (70-164)||(29903082-29903180)
chr6 (189-354)||(29905273-29905437)
chr6 (20-164)||(29889556-29889700)
chr6 (229-404)||(29889104-29889278)
chr6 (331-401)||(25450495-25450565)
chr6 (111-165)||(30149352-30149406)
chr6 (89-165)||(24886615-24886691)
[»] scaffold0237 (1 HSPs)
scaffold0237 (25-400)||(21931-22308)
[»] chr2 (1 HSPs)
chr2 (25-404)||(15062910-15063291)
[»] scaffold0054 (2 HSPs)
scaffold0054 (20-392)||(53625-53999)
scaffold0054 (295-404)||(54007-54116)
[»] scaffold0573 (1 HSPs)
scaffold0573 (20-348)||(3777-4107)
[»] scaffold0654 (1 HSPs)
scaffold0654 (295-395)||(1526-1626)
[»] scaffold0308 (1 HSPs)
scaffold0308 (310-395)||(8588-8673)
[»] scaffold0429 (1 HSPs)
scaffold0429 (332-395)||(5789-5852)
[»] scaffold0051 (2 HSPs)
scaffold0051 (332-395)||(43630-43693)
scaffold0051 (89-164)||(43383-43458)
[»] scaffold0014 (3 HSPs)
scaffold0014 (310-395)||(121792-121877)
scaffold0014 (89-156)||(140132-140199)
scaffold0014 (334-395)||(105083-105144)
[»] scaffold0019 (1 HSPs)
scaffold0019 (310-395)||(126444-126529)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 4260345 - 4260790
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4260345 ctcccggatttgcacaaaccatcaataagggtatggtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 4260444  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagctacg---gtcataagacaattccctttcagccatagttttgaatatactttgggc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4260445 ccaccattttcattttacaaaattcattaatcatgatattgtagctacgaacgtcataagacaattccctttcagccatagttttgaatatactttgggc 4260544  T
Q  216 cttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatt 315  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  4260545 cttgaacacttcattaacaaggcaat-atccattcattaaagagctataagcaacaacatcggattttaaatctttttccatcatcgtattgagcacatt 4260643  T
Q  316 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatcannnnnnnaaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||    
T  4260644 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccattaaaagtatacacattcgggttaatgttttccgatatcatttttttaaac 4260743  T
Q  416 aaacccaacgcttcttctaatttaccaacaacgcaaaaaccatcaat 462  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4260744 aaacccaacgcttcttccaatttaccaacaacgcaaaaaccatcaat 4260790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 4263967 - 4264412
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4263967 ctcccggatttgcacaaaccatcaataagggtatggtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 4264066  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagctacg---gtcataagacaattccctttcagccatagttttgaatatactttgggc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4264067 ccaccattttcattttacaaaattcattaatcatgatattgtagctacgaacgtcataagacaattccctttcagccatagttttgaatatactttgggc 4264166  T
Q  216 cttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatt 315  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  4264167 cttgaacacttcattaacaaggcaat-atccattcattaaagagctataagcaacaacatcggattttaaatctttttccatcatcgtattgagcacatt 4264265  T
Q  316 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatcannnnnnnaaac 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||       ||||    
T  4264266 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccattaaaagtatacacattcgggttaatgttttccgatatcatttttttaaac 4264365  T
Q  416 aaacccaacgcttcttctaatttaccaacaacgcaaaaaccatcaat 462  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  4264366 aaacccaacgcttcttccaatttaccaacaacgcaaaaaccatcaat 4264412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 10130015 - 10129966
Alignment:
Q  112 gcttcatccaccattttcattttacaaaattcattaatcatgatattgta 161  Q
    ||||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  10130015 gcttcatccaccattttaatcttacaaaatccattaatcatgatactgta 10129966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 19490151 - 19490084
Alignment:
Q  89 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgata 156  Q
    ||||||||||||||||  | |  |||||||||| ||||||||| ||||| ||| ||||||||||||||    
T  19490151 gcatttcttcaaagagacttaccgcttcatccaacattttcatcttacataatccattaatcatgata 19490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 404
Target Start/End: Complemental strand, 10129793 - 10129721
Alignment:
Q  332 tttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    ||||| ||||||||||| ||||| ||||||  | | |  ||||| ||||||||||||||||||||| ||||||    
T  10129793 tttccatccttacaaaaagcatcaaccaatatactcatggtataaacatttgggttaatgttttccaatatca 10129721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 24219269 - 24219650
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||||||||| ||||||| |||||| || ||||| || ||||| |||||||||  | ||||||||||||||||||| ||||||||||||||||    
T  24219269 gatttgcacaaaccatcaataagggaattgtacgtcaccacatcgggaaaaatttgtttgcaatgcatttcttcaaagagtttcatggcttcatccacca 24219368  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacg---gtcataagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| || ||||||||||| |||| ||| |   ||||  || || | |  ||| ||||||||| ||||||||||||| |||||||      
T  24219369 ttttaatcttacaaaatccactaatcatgatactgtaactatgaacgtcaggagccactccaatttgagccatagtgttgaatatactttcggccttgtt 24219468  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    ||| ||||| || || |||| ||||||||| ||||||| |||||| |||||  |  ||||||| |||||||| |||||||| | | | ||||||||||||    
T  24219469 cacctcatttaccagacaat-atccattcattaaagagttataagtaacaatgttaggttttacatcttttttcatcatcacaacaaacacatttttagc 24219567  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||||  |  ||||||||||||||||| ||||| ||||||  | |||| ||||||||| ||||||| ||||||||| ||||||    
T  24219568 ttctttcacttttccttccttacaaaatgcatcaaccaatatactaaaggtatacacagttgggttgatgttttccaatatca 24219650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 33997904 - 33997767
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||||   || | |||   | |||| |||| |||||| || ||||||||||||||| |    
T  33997904 atttgcacaaaccatcaataaggatattgtaagttaccacatcaggattaatctttttccaatgcatctctttaaagagattcatggcttcatccaccct 33997805  T
Q  126 tttcattttacaaaattcattaatcatgatattgtagc 163  Q
    |||  | || || ||| ||||||| |||||||||||||    
T  33997804 ttttttcttgcacaatccattaataatgatattgtagc 33997767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 16350728 - 16350643
Alignment:
Q  310 cacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    |||||||||||||||||  |||||||||||||||||||  ||||| ||||||  | ||||||||||  ||| |||||| |||||||    
T  16350728 cacatttttagcttctttgatctttccttccttacaaagagcatcaaccaatatattaaaagtataagcatctgggttgatgtttt 16350643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 16350929 - 16350873
Alignment:
Q  111 ggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagctacg 167  Q
    |||||| || |||||||| || ||||| ||| |||||||||||||||| ||||||||    
T  16350929 ggcttcgtcgaccattttaatcttacagaatccattaatcatgatattatagctacg 16350873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 24226699 - 24226643
Alignment:
Q  111 ggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagctacg 167  Q
    ||||||||||||||||||  | ||||| ||| ||||||||||||  |||||||||||    
T  24226699 ggcttcatccaccattttattcttacataatccattaatcatgactttgtagctacg 24226643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 25 - 389
Target Start/End: Complemental strand, 25451083 - 25450717
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||||||||| | ||||| | ||||||||||||| ||||||||||||||||||    ||||||||||||| |||||  |||||||||||||||    
T  25451083 gatttgcacaaaccatcaacaagggaactgtaagttaccacatcaggaaatatttgtttggactgcatttcttcaaaaagtttcctggcttcatccacca 25450984  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacg---gtcataagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || |||||||||| | ||||||||||| |||||||| |   |||| ||| || | |||||| || |||| |||||||||| || | ||||| |      
T  25450983 ttttaatcttacaaaatttactaatcatgatagtgtagctaagaacgtcaaaagtcactcccctttgagtcatacttttgaatattctcttggcctcgtt 25450884  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    |||||||||||| || |||| |||||| || |||| |||||||||  | |||||  ||| | |  |||||||||||||||| || ||||||||  |||||    
T  25450883 cacttcattaactagacaat-atccatacaataaacagctataagtgataacattaggtgtcacgtctttttccatcatcacattgagcacatagttagc 25450785  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaa 389  Q
    ||  || |||||  ||||||||||||| ||||| ||||||  |||||||||||||||||| |||||||    
T  25450784 tttgtcaatcttctcttccttacaaaaagcatcaaccaatatagtaaaagtatacacattcgggttaa 25450717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 25 - 404
Target Start/End: Complemental strand, 29882400 - 29882019
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||| ||||||||||||| | | ||||||| ||| |||||||| ||||||||| || |||||||||  || ||||| ||||||||||||||||    
T  29882400 gatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccacca 29882301  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacggtcat---aagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| |||||||||||||| |||||||  |  |||    || || | |||| | || |||||| ||||||||||| | |||||||      
T  29882300 ttttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgtt 29882201  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    ||||||||| || || |||| |||||| || ||||||||| |||| ||||||||| ||||| |   ||| || |||||||||| | | ||||||||||||    
T  29882200 cacttcatttaccagacaat-atccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagc 29882102  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||||  | | ||||||||||||||||  |||| ||||||  | |||| ||||||||||| || || ||||||||| ||||||    
T  29882101 ttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacacattcggattgatgttttccaatatca 29882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 25 - 404
Target Start/End: Complemental strand, 29909556 - 29909175
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||| ||||||||||||| | | ||||||| ||| |||||||| ||||||||| || |||||||||  || ||||| ||||||||||||||||    
T  29909556 gatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccacca 29909457  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacggtcat---aagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| |||||||||||||| |||||||  |  |||    || || | |||| | || |||||| ||||||||||| | |||||||      
T  29909456 ttttaatcttacaaaatccattaatcatgatactgtagctctgaacattagcagtcactcccctatgagacatagtgttgaatatactctcggccttgtt 29909357  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    ||||||||| || || |||| |||||| || ||||||||| |||| ||||||||| ||||| |   ||| || |||||||||| | | ||||||||||||    
T  29909356 cacttcatttaccagacaat-atccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatttttagc 29909258  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||||  | | ||||||||||||||||  |||| ||||||  | |||| ||||||||||| || || ||||||||| ||||||    
T  29909257 ttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacacattcggattgatgttttccaatatca 29909175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 361
Target Start/End: Complemental strand, 29929244 - 29928900
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||| ||||||||||| ||||||||||||| | | ||||||| ||| |||||||| ||||||||| || |||||||||  || ||||| ||||||||||    
T  29929244 ctccctgatttgcacaatccatcgataagggcactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcat 29929145  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagc---tacggtcataagacaattccctttcagccatagttttgaatatactttgggc 215  Q
    |||||||||| || ||||||||| |||||||||||||| ||||||   ||   | |  || || | |||| | || |||||| ||||||||||| | |||    
T  29929144 ccaccattttaatcttacaaaatccattaatcatgatactgtagctcttagcattagcagtcactcccctatgagacatagtgttgaatatactctcggc 29929045  T
Q  216 cttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatt 315  Q
    ||||  ||||||||| ||||| |||| |||||| || ||||||||| |||| ||||||||| ||||| |   ||| || |||||||||| | | ||||||    
T  29929044 cttgttcacttcatttacaagacaat-atccatccattaaagagctgtaagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacatt 29928946  T
Q  316 tttagcttcttctatctttccttccttacaaaaggcatctaccaat 361  Q
    |||||||||||  | | ||||||||||||||||  |||| ||||||    
T  29928945 tttagcttctttcacccttccttccttacaaaatccatcaaccaat 29928900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 25 - 458
Target Start/End: Original strand, 24271981 - 24272416
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||| ||||| ||||||| | | ||||||| ||| | |||||| ||||||||| || |||||||||  || ||||| ||||||| ||||||||    
T  24271981 gatttgcacaatccatcaataagggaactataagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttgatccacca 24272080  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacggtcataa---gacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || |||||||||  ||||||||||||| ||||||| ||  ||| |   | || | |||| | || |||||| ||||||||||| | |||||||      
T  24272081 ttttaatcttacaaaatctattaatcatgatactgtagctccgaacattagcggtcactcccctatgagacatagtgttgaatatactcttggccttgtt 24272180  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    ||||||||| || || |||| ||| || || ||||||| |||||| |||||| || ||||| |   ||| || |||||||||| | | | ||||||||||    
T  24272181 cacttcatttaccagacaat-atcgatccattaaagagttataagtaacaacgtcaggtttaatgccttgtttcatcatcatagctaacccatttttagc 24272279  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatcannnnnnnaaacaaaccc 421  Q
    |||||  | | |||||||||||||||| ||||| ||||||  | |||||||||||||||  ||||| |||||||||||| |||        ||||||||     
T  24272280 ttctttcacccttccttccttacaaaatgcatcaaccaatatattaaaagtatacacatcagggttgatgttttccgatgtcattttattgaacaaacca 24272379  T
Q  422 aacgcttcttctaatttaccaacaacgcaaaaaccat 458  Q
    |  || ||||  ||||||||||||| |||||||||||    
T  24272380 attgcatctttcaatttaccaacaatgcaaaaaccat 24272416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 29887267 - 29886885
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| |||||||||||||||| |||||||| ||||||||||||||| ||||||| || || | |   | |||||||||||||||| || |||||||||||    
T  29887267 tccccgatttgcacaaaccattgataagggaattgtaagttaccacatcaggaattagttttctacaatgcatttcttcaaagagattcatggcttcatc 29887168  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggcc 216  Q
       |||||| || ||||||||| |||||||||||||||||||||| |   ||| ||    || | ||||   || ||||||  |||||||||  | |||     
T  29887167 ggtcattttaatcttacaaaatccattaatcatgatattgtagctccaaacattagcagtcactcccctaagagacatagtgctgaatatacccttggca 29887068  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    |||  |||||||||||| |||||||| ||||| || |||||||||||||| |||| |||  || || |   ||| || |||||||||| | | |||||||    
T  29887067 ttgttcacttcattaactaggcaata-tccatccattaaagagctataagtaacagcattaggattgatgccttgtttcatcatcatagctaacacattt 29886969  T
Q  317 ttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgat 400  Q
    ||||| |||| ||  ||||||||||||||||| ||||| ||||||  | |||||||||||||| ||||||| ||||||| ||||    
T  29886968 ttagcctcttttacgtttccttccttacaaaatgcatcaaccaatatattaaaagtatacacagttgggttgatgtttttcgat 29886885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 400
Target Start/End: Original strand, 24263786 - 24264163
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||| ||||| ||||||| ||| ||||||| ||| | |||||| ||||||||| || |||||||||  || ||||| ||||||| ||||||||    
T  24263786 gatttgcacaatccatcaataagggaattataagttatcacattaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttgatccacca 24263885  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacggtca-ta--agacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| |||||||||  ||||||||||| ||  || ||  || || | |||| | || |||||| || |||||||| | |||| ||      
T  24263886 ttttaatcttacaaaatccattaatcacaatattgtagctccgaacagtagcagtcactcccctatgagacatagtgtttaatatactcttggccatgtt 24263985  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    ||||||||| || || |||| |||||| || ||||||| |||||| |||||  || ||||| |   ||| || |||||||||| | | | ||||||||||    
T  24263986 cacttcatttaccagacaat-atccatccattaaagagttataagtaacaatgtcaggtttaatgccttgtttcatcatcatagctaacccatttttagc 24264084  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgat 400  Q
    |||||  | | |||||||||||||||| ||||| ||||||  | |||||||||||||||  ||||| ||||||||||||    
T  24264085 ttctttcacccttccttccttacaaaatgcatcaaccaatatattaaaagtatacacatcagggttgatgttttccgat 24264163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 29946408 - 29946262
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||| ||| ||||||||||||  ||||||| ||||||||||||||| | |||||| |||||||||  | |||||||||||||||| || ||||||||||    
T  29946408 ctccccgatctgcacaaaccattaataagggaattgtaagttaccacattaggaaaaatttgtttgcaatgcatttcttcaaagagattcatggcttcat 29946309  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagcta 165  Q
    |||||||||| || ||||||||| |||||||||||||| | ||||||    
T  29946308 ccaccattttaatcttacaaaatccattaatcatgataatatagcta 29946262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 29348627 - 29349013
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||| ||||||| ||||||||||||||| |||||||  || | ||||  | ||||||||| |||||| || |||||||||||    
T  29348627 tccctgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatc 29348726  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagctacggtcat---aagacaattccctttcagccatagttttgaatatactttgggcc 216  Q
     ||| |||| || ||||||||  | ||||||||||||||||||||  |  |||    || || | |||  | ||||||||| ||||||||||| |  |||    
T  29348727 aacctttttaatcttacaaaacccgttaatcatgatattgtagctctgaacattagcagtcactcccccctgagccatagtgttgaatatactcttagcc 29348826  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    ||   |||||  ||||| ||||||| |||||| || |||||||| ||||| ||||||||| ||||| |   ||| || |||||||||| | | |||||||    
T  29348827 ttattcacttgtttaactaggcaat-atccatccattaaagagcaataagtaacaacatcaggtttaatgccttgtttcatcatcatagctaacacattt 29348925  T
Q  317 ttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    ||||||||||  | | ||||||||||||||||  |||| ||||||  | |||| ||||||||||  ||||| || | |||||||||||    
T  29348926 ttagcttctttcacccttccttccttacaaaatccatcaaccaatatactaaaggtatacacatcagggttgatttcttccgatatca 29349013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 29866619 - 29866240
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||||||||||||||| ||||||| ||||||||||||||| |||||||  |||| | ||  | |||||||||||||||| || |||||||||||    
T  29866619 tccccgatttgcacaaaccatcaataagggaattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatc 29866520  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagct---acggtcataagacaattccctttcagccatagttttgaatatactttgggcc 216  Q
    |  |||||| || |||||||   ||||||||| |||| |||| ||   |   |||  |  || | |||  | |||||| || ||||||||||| |  |||    
T  29866519 cgtcattttaatcttacaaagcccattaatcaagatactgtaactgtgaatatcaggattcactcccccctgagccattgtgttgaatatactcttcgcc 29866420  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    ||   |||||  ||||| ||||||| |||||| || ||||| |||||||| |||||||| |||||| |   ||| || |||||||||| | | |||||||    
T  29866419 ttattcacttttttaactaggcaat-atccatccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacattt 29866321  T
Q  317 ttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttcc 397  Q
    ||||||||||  || ||||||||||||||||| ||||| ||||||  | |||| ||||||| ||  ||||| |||||||||    
T  29866320 ttagcttctttcatttttccttccttacaaaatgcatcaaccaatatattaaaggtatacatatcagggttgatgttttcc 29866240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 28926576 - 28926906
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||| | |||||  |||| | ||  | |||||||||||||||| || |||||| ||||    
T  28926576 tccccgatttacacaaaccatcgataagggaattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatc 28926675  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggcc 216  Q
       |||||| || ||||||||  ||||||||| ||||||||| ||  |   || ||    || | |||  | ||||||| | ||||||||||| |  |||    
T  28926676 ggtcattttaatcttacaaaacccattaatcaagatattgtaactctgaatatcaggattcactcccccctgagccatattgttgaatatactcttagcc 28926775  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    |||  |||||| |||||||||||||| ||||| || |||||||||||||| |||||| |  ||||| ||| |||||| |||||||  | | | |||||||    
T  28926776 ttgttcacttctttaacaaggcaata-tccatccattaaagagctataagtaacaacgttaggtttgaaaccttttttcatcatcgcagcaaacacattt 28926874  T
Q  317 ttagcttcttctatctttccttccttacaaaa 348  Q
    |||||||||| ||  |||||||||||||||||    
T  28926875 ttagcttcttttacttttccttccttacaaaa 28926906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 26 - 397
Target Start/End: Complemental strand, 29835179 - 29834806
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||| ||||||||||| ||||||| ||||||||||||||| |||||||  |||| | ||  | |||||||||||||||| || ||||||||||||  |||    
T  29835179 atttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatttttctgcaatgcatttcttcaaagagattcatggcttcatccgtcat 29835080  T
Q  126 tttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggccttgaac 222  Q
    ||| || |||||||   ||||||||| |||| |||| ||  |   || ||    || | |||  | |||||| || ||||||||||| |  |||||   |    
T  29835079 tttaatcttacaaagcccattaatcaagatactgtaactgtgaatatcaggattcactcccccctgagccattgtgttgaatatactcttcgccttattc 29834980  T
Q  223 acttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagct 322  Q
    ||||  ||||| |||||||| ||||| || ||||| |||||||| |||||||| |||||| |   ||| || |||||||||| | | |||||||||||||    
T  29834979 acttttttaactaggcaata-tccatccattaaagcgctataagtaacaacattgggtttcatgccttgtttcatcatcatagctaacacatttttagct 29834881  T
Q  323 tcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttcc 397  Q
    ||||  || ||||||||||||||||| ||||| ||||||  | |||| ||||||| ||  ||||| |||||||||    
T  29834880 tctttcatttttccttccttacaaaatgcatcaaccaatatattaaaggtatacatatcagggttgatgttttcc 29834806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 29905604 - 29905468
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||| || || | |   | |||||||||||||||| || ||||||||||| |||     
T  29905604 gatttacacaaaccatcgataagggaattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcaacct 29905505  T
Q  125 ttttcattttacaaaattcattaatcatgatattgta 161  Q
    |||| || ||||||||  ||||||||| |||||||||    
T  29905504 ttttaatcttacaaaacccattaatcaagatattgta 29905468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 30118775 - 30118911
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||| ||||||||||||||||||| ||||||||||||||| ||||||| || || | |   | |||||||||||||||| || ||||||||||| |||     
T  30118775 gatttacacaaaccatcgataagggaattgtaagttaccacatcaggaattaattttctacaatgcatttcttcaaagagatttatggcttcatcgacct 30118874  T
Q  125 ttttcattttacaaaattcattaatcatgatattgta 161  Q
    |||| || ||||||||  ||||||||| |||||||||    
T  30118875 ttttaatcttacaaaacccattaatcaagatattgta 30118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 29903001 - 29902848
Alignment:
Q  243 atccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagcttcttctatctttccttcctt 342  Q
    |||||| || ||||||| |||||| |||||| || ||||| |   ||| || |||||||||| | | |||||||||||||||||  | | ||||||||||    
T  29903001 atccatccattaaagagttataagtaacaacgtcaggtttgatgccttgtttcatcatcatagctaacacatttttagcttctttcacccttccttcctt 29902902  T
Q  343 acaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttc 396  Q
    ||||||  |||| ||||||  |||||||||||||||||||||||| ||||||||    
T  29902901 acaaaaaccatcaaccaatatagtaaaagtatacacatttgggttgatgttttc 29902848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 29894517 - 29894382
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||| ||||||||||| ||||||| ||||||||||||||| |||||||  || |||||| || ||||||||| |||||| || || |||||||| ||| |    
T  29894517 atttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctttaaagagattcatagcttcatcgacctt 29894418  T
Q  126 tttcattttacaaaattcattaatcatgatattgta 161  Q
    ||| || ||||||||  ||| ||||| |||||||||    
T  29894417 tttaatcttacaaaacccatcaatcaagatattgta 29894382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 30127089 - 30127228
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||| || |||||||| ||||||| | | ||||||||||| |||||||  |||| ||||    |||||||||||||||| || ||||||||| |||||     
T  30127089 gatttacagaaaccatcaataagggaactataagttaccacatcaggaataatttttttgcattgcatttcttcaaagagattaatggcttcacccaccc 30127188  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagct 164  Q
    |||| || ||||||||  ||||||||||||||||||||||    
T  30127189 ttttaatcttacaaaacccattaatcatgatattgtagct 30127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 29099314 - 29098927
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||| |||||||  |||||||| ||||||| | |||||||||| || |||||||  || | |||| || ||||||||| |||||| || ||||||||||    
T  29099314 ctccctgatttgcttaaaccatcaataagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcat 29099215  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggc 215  Q
    | | | |||| || ||||||||  | |||||||||||| |||| ||  |   || ||    || | |||  | ||||||||| ||||||||||| |  ||    
T  29099214 caaactttttaatcttacaaaacccgttaatcatgatactgtaactctgaatatcaggattcactcccccctgagccatagtgttgaatatactcttagc 29099115  T
Q  216 cttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatt 315  Q
    |||   |||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||  ||||| |   ||| || |||||||||||| | |||| |    
T  29099114 cttattcacttctttaactaggcaata-tccatccattaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagt 29099016  T
Q  316 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||| ||||||  |||||||| ||||||||||| ||||  ||||||  | |||||||||||||||  || || ||||||||| ||||||    
T  29099015 tttaccttctttcatctttccgtccttacaaaatgcattaaccaatatattaaaagtatacacatccggtttgatgttttccaatatca 29098927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 29116232 - 29115845
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||| |||||||  |||||||| ||||||| | |||||||||| || |||||||  || | |||| || ||||||||| |||||| || ||||||||||    
T  29116232 ctccctgatttgcttaaaccatcaataagggaactgtaagttacgacatcaggaataatgtttttgcgatgcatttctttaaagagattcatggcttcat 29116133  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggc 215  Q
    | | | |||| || ||||||||  | |||||||||||| |||| ||  |   || ||    || | |||  | ||||||||| ||||||||||| |  ||    
T  29116132 caaactttttaatcttacaaaacccgttaatcatgatactgtaactctgaatatcaggattcactcccccctgagccatagtgttgaatatactcttagc 29116033  T
Q  216 cttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatt 315  Q
    |||   |||||| ||||| |||||||| ||||| || ||||||| |||||| ||||| ||  ||||| |   ||| || |||||||||||| | |||| |    
T  29116032 cttattcacttctttaactaggcaata-tccatccattaaagagttataagtaacaaaattaggtttgatgccttgtttcatcatcatatcaaacacagt 29115934  T
Q  316 tttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||| ||||||  |||||||| ||||||||||| ||||  ||||||  | |||||||||||||||  || || ||||||||| ||||||    
T  29115933 tttaccttctttcatctttccgtccttacaaaatgcattaaccaatatattaaaagtatacacatccggtttgatgttttccaatatca 29115845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 30060207 - 30060335
Alignment:
Q  36 accatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccattttcatttta 135  Q
    |||||| ||||||| |||||| |||||||| |||||||  || | ||||  | |||||||||||||||| || ||||||||||| ||| |||| || |||    
T  30060207 accatcaataagggaattgtatgttaccacatcaggaataatgtttttgcaatgcatttcttcaaagagattcatggcttcatcgacctttttaatctta 30060306  T
Q  136 caaaattcattaatcatgatattgtagct 164  Q
    |||||  |||||||||| |||||||||||    
T  30060307 caaaacccattaatcattatattgtagct 30060335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 153
Target Start/End: Original strand, 24890281 - 24890408
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||| ||||||||||| ||||||| | ||||||||||||| | |||||  |||| | |   | |||||||||||||||| || |||||||||||||||||    
T  24890281 atttacacaaaccatcaataagggaactgtaagttaccacattaggaataatttttctacaacgcatttcttcaaagagatttatggcttcatccaccat 24890380  T
Q  126 tttcattttacaaaattcattaatcatg 153  Q
    ||| || ||||||||| |||||| ||||    
T  24890381 tttaatcttacaaaatccattaaccatg 24890408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 29358008 - 29358149
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| || |||||||| ||||||| | ||||||||||||||| |||||  ||||||||| || |||||||||  |  ||||  |||||||||||    
T  29358008 tccccgatttacataaaccatcaataagggaactgtaagttaccacgttaggaataatttgtttgtgatgcatttctttgagtagttccatggcttcatc 29358107  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgta 161  Q
    || |||||| || ||||||||  ||||||||| |||| ||||    
T  29358108 catcattttaatcttacaaaacccattaatcaagatactgta 29358149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 404
Target Start/End: Complemental strand, 29073561 - 29073347
Alignment:
Q  189 agccatagttttgaatatactttgggccttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatc 288  Q
    ||||||||| ||||||||||| |  |||||   |||||  ||||| |||||||| ||||| || |||||||| ||||| ||||||||  ||||| |   |    
T  29073561 agccatagtgttgaatatactattagccttattcacttgtttaactaggcaata-tccatccattaaagagcaataagtaacaacattaggtttaatgcc 29073463  T
Q  289 tttttccatcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggtta 388  Q
    || || |||||||||| | | |||| ||||| ||||||  |||||||| |||||||||||  |||| ||||||  | |||||||||||||||  || ||     
T  29073462 ttgtttcatcatcatagcaaacacagttttaccttctttcatctttccgtccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttg 29073363  T
Q  389 atgttttccgatatca 404  Q
    ||||||||| ||||||    
T  29073362 atgttttccaatatca 29073347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 189 - 404
Target Start/End: Complemental strand, 29106134 - 29105920
Alignment:
Q  189 agccatagttttgaatatactttgggccttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatc 288  Q
    ||||||||| ||||||||||| |  |||||   |||||  ||||| |||||||| ||||| || |||||||| ||||| ||||||||  ||||| |   |    
T  29106134 agccatagtgttgaatatactattagccttattcacttgtttaactaggcaata-tccatccattaaagagcaataagtaacaacattaggtttaatgcc 29106036  T
Q  289 tttttccatcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggtta 388  Q
    || || |||||||||| | | |||| ||||| ||||||  |||||||| |||||||||||  |||| ||||||  | |||||||||||||||  || ||     
T  29106035 ttgtttcatcatcatagcaaacacagttttaccttctttcatctttccgtccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttg 29105936  T
Q  389 atgttttccgatatca 404  Q
    ||||||||| ||||||    
T  29105935 atgttttccaatatca 29105920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 396
Target Start/End: Original strand, 29366456 - 29366828
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||| ||||||||||| ||||||| ||||||||||||||| |||||||  || |  |||  | ||||||||| |||||| || ||||||||||| ||| |    
T  29366456 atttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatgttattgcaatgcatttctttaaagagattcatggcttcatcgacctt 29366555  T
Q  126 tttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggccttgaac 222  Q
    ||| || ||||||||  | | |||||||||| |||||||  |   || ||    || | |||| | ||  ||||| |||||||||  ||  |||||        
T  29366556 tttaatcttacaaaacccgtgaatcatgatactgtagctgtgaatattaggattcactcccctctgagatatagtgttgaatatatgtttagccttattg 29366655  T
Q  223 acttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagct 322  Q
    ||||| ||||| |||||||| || || || ||||||| |||||| || ||| || ||||| |   ||| || |||||||||| | |||||||||||||||    
T  29366656 acttctttaactaggcaata-tctatccattaaagagttataagtaaaaacgtcaggtttaatgccttgtttcatcatcatagctagcacatttttagct 29366754  T
Q  323 tcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttc 396  Q
    ||||  | | ||| ||||||||||||  |||| ||||||    |||||||||||||||||||||| ||||||||    
T  29366755 tctttcaaccttctttccttacaaaatccatcaaccaatatgttaaaagtatacacatttgggttgatgttttc 29366828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 16702339 - 16702424
Alignment:
Q  310 cacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    |||||||||||||||||  |||||||| ||||||||||  ||||| ||||||  | |||||||||| ||||||||||| |||||||    
T  16702339 cacatttttagcttctttgatctttccgtccttacaaagagcatcaaccaatatattaaaagtataaacatttgggttgatgtttt 16702424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 24730812 - 24730692
Alignment:
Q  33 caaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccattttcatt 132  Q
    ||||||||| ||||||| ||||||||||||||| | |||||  |||| | |   | |||||||||||||||| || |  ||||||||||||||||| ||     
T  24730812 caaaccatcaataagggaattgtaagttaccacattaggaataatttttctacaacgcatttcttcaaagagatttacagcttcatccaccattttaatc 24730713  T
Q  133 ttacaaaattcattaatcatg 153  Q
    ||||| ||| |||||||||||    
T  24730712 ttacataatccattaatcatg 24730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 31000036 - 31000100
Alignment:
Q  89 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatg 153  Q
    |||||||||||||||| || |||||||||||||||||||| || || |||||| |||||||||||    
T  31000036 gcatttcttcaaagagatttatggcttcatccaccattttaatcttgcaaaatccattaatcatg 31000100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 29898041 - 29897906
Alignment:
Q  26 atttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccat 125  Q
    |||| ||||||||||||||||| | ||||||||||||||| ||||||| ||  | | |   | |||||||||||||||| || |||||||||||   |||    
T  29898041 atttacacaaaccatcgataagagaattgtaagttaccacatcaggaattagctttctacaatgcatttcttcaaagagattcatggcttcatcggtcat 29897942  T
Q  126 tttcattttacaaaattcattaatcatgatattgta 161  Q
    |||  | ||||||||  ||||||||| |||||||||    
T  29897941 tttactcttacaaaacccattaatcaagatattgta 29897906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 404
Target Start/End: Complemental strand, 29894318 - 29894137
Alignment:
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    |||||| ||||| |||||||| ||||| || |||||||| ||| | ||||||||  ||||| |   ||| || |||||||||| | | |||| ||||| |    
T  29894318 cacttctttaactaggcaata-tccatccattaaagagcaataggtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagttttacc 29894220  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    |||||  |||||||| |||||||||||  |||| ||||||  | |||||||||||||||  || || ||||||||| ||||||    
T  29894219 ttctttcatctttccgtccttacaaaatccatcaaccaatatattaaaagtatacacatccggtttgatgttttccaatatca 29894137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 29358285 - 29358394
Alignment:
Q  295 catcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttt 394  Q
    |||||||||| | | |||||||||||||||||  | | ||||||||||||||||  |||| || |||  |||||| ||||||||||  ||||| ||||||    
T  29358285 catcatcatagctaacacatttttagcttctttcacccttccttccttacaaaatccatcaactaatatagtaaaggtatacacatccgggttgatgttt 29358384  T
Q  395 tccgatatca 404  Q
    ||| ||||||    
T  29358385 tccaatatca 29358394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 24890588 - 24890654
Alignment:
Q  331 ctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttcc 397  Q
    ||||||||||||||||||| |||| |||| |  | |||| ||||||||||||||||| |||||||||    
T  24890588 ctttccttccttacaaaagccatcaaccagtatattaaaggtatacacatttgggttgatgttttcc 24890654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 29073733 - 29073592
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||| ||||| | | ||||||| ||||| | |||||  || | ||||  | |||||| || |||||| || |||||||||||    
T  29073733 tccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatc 29073634  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgta 161  Q
     ||| |||| || ||||||||  | |||||||||||||||||    
T  29073633 aacctttttaatcttacaaaacccgttaatcatgatattgta 29073592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 29078497 - 29078356
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||| ||||| | | ||||||| ||||| | |||||  || | ||||  | |||||| || |||||| || |||||||||||    
T  29078497 tccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatc 29078398  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgta 161  Q
     ||| |||| || ||||||||  | |||||||||||||||||    
T  29078397 aacctttttaatcttacaaaacccgttaatcatgatattgta 29078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 402
Target Start/End: Complemental strand, 29084816 - 29084604
Alignment:
Q  189 agccatagttttgaatatactttgggccttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatc 288  Q
    ||||||||| ||||||||||| |  ||| |   |||||| ||||| |||||||| ||||| || ||||||| |||||| ||||||||| ||| | |   |    
T  29084816 agccatagtgttgaatatactcttagccgtattcacttctttaactaggcaata-tccatccattaaagagttataagtaacaacatcaggtatgatgcc 29084718  T
Q  289 tttttccatcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggtta 388  Q
    || || |||||||||| | | |||| ||||| ||||||  |||||||  |||||||||||  |||| ||||||  | ||||||||||| |||  || ||     
T  29084717 ttgtttcatcatcatagcaaacacagttttaccttctttcatctttctgtccttacaaaatccatcaaccaatatattaaaagtatacccatccggtttg 29084618  T
Q  389 atgttttccgatat 402  Q
    ||||||||| ||||    
T  29084617 atgttttccaatat 29084604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 29106306 - 29106165
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||| ||||| | | ||||||| ||||| | |||||  || | ||||  | |||||| || |||||| || |||||||||||    
T  29106306 tccccgatttacacaaaccatcaataagagaagtgtaagtcaccacattaggaataatgtttttgcaatgcatttttttaaagagattcatggcttcatc 29106207  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgta 161  Q
     ||| |||| || ||||||||  | |||||||||||||||||    
T  29106206 aacctttttaatcttacaaaacccgttaatcatgatattgta 29106165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 29876796 - 29876651
Alignment:
Q  19 ctcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcat 118  Q
    ||||| |||||||| |||||||| ||||||| | | |||| || |   ||||||| ||||| |||   | |||||||||  ||||| || || |||||||    
T  29876796 ctccccgatttgcaaaaaccatcaataagggaactataagctatcgtatcaggaattatttctttacaatgcatttcttggaagagattcattgcttcat 29876697  T
Q  119 ccaccattttcattttacaaaattcattaatcatgatattgtagct 164  Q
    ||| |||||| |  ||||||||| |||||||||||||| |||||||    
T  29876696 ccatcattttaaccttacaaaatccattaatcatgatactgtagct 29876651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 326
Target Start/End: Complemental strand, 29897875 - 29897739
Alignment:
Q  189 agccatagttttgaatatactttgggccttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatc 288  Q
    ||||||||| ||||||||||| |  |||||   |||||| ||||| |||||||| ||||| || ||||||| |||||| || |||||  ||||| |  ||    
T  29897875 agccatagtgttgaatatactcttagccttattcacttctttaactaggcaata-tccatccattaaagagttataagtaaaaacattaggtttaatgtc 29897777  T
Q  289 tttttccatcatcatatcgagcacatttttagcttctt 326  Q
    || || |||||||||| | | |||||||||||||||||    
T  29897776 ttgtttcatcatcatagcaaacacatttttagcttctt 29897739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 29903180 - 29903082
Alignment:
Q  70 ggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaa----ttcattaatcatgatattgtagct 164  Q
    ||||| ||||||||| || ||||||||   || ||||| |||||||||||||||||||| || ||||||||    || |||||||||||| ||||||||    
T  29903180 ggaaaaatttgtttgcgatgcatttctctgaaaagtttcatggcttcatccaccattttaatcttacaaaacccgttaattaatcatgatgttgtagct 29903082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 354
Target Start/End: Complemental strand, 29905437 - 29905273
Alignment:
Q  189 agccatagttttgaatatactttgggccttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatc 288  Q
    ||||||||| ||||||||||| |  |||||   |||||| ||||  | |||||| ||||| || ||||||| |||||| |||||  |  ||||| ||| |    
T  29905437 agccatagtgttgaatatactcttagccttattcacttctttaagtaagcaata-tccatccattaaagagttataagtaacaaagttaggtttgaaacc 29905339  T
Q  289 tttttccatcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatc 354  Q
    ||||| |||||| | | | | ||||||||||||||||| ||  ||||||||||||||||| |||||    
T  29905338 ttttttcatcataacaacaaacacatttttagcttcttttacttttccttccttacaaaatgcatc 29905273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 29889700 - 29889556
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| |||||||  |||||||| ||||| | ||||||||| ||||| | |||||  || | ||||  | ||||||||| |||||| || |||||||||||    
T  29889700 tccctgatttgcttaaaccatcaataagagaattgtaagtcaccacattaggaataatgtttttgcaatgcatttctttaaagagattcatggcttcatc 29889601  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagct 164  Q
     ||  |||| || ||||||||  ||||||||||  ||||||||||    
T  29889600 gacttttttaatcttacaaaacccattaatcattgtattgtagct 29889556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 404
Target Start/End: Complemental strand, 29889278 - 29889104
Alignment:
Q  229 ttaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagcttcttct 328  Q
    ||||| |||||||| ||||| || ||||||| |||||| ||||||||   |||| |  |||  || |||||||||| | | |||||||||||||||||      
T  29889278 ttaactaggcaata-tccatccattaaagagttataagtaacaacattaagtttgatgtctcgtttcatcatcatagctaacacatttttagcttctttc 29889180  T
Q  329 atctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    | | ||||||||||||||||  |||| |||| |    |||| ||||||||||| || || ||||||||| ||||||    
T  29889179 acccttccttccttacaaaatccatcaaccattatgttaaaggtatacacattcggattgatgttttccaatatca 29889104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 401
Target Start/End: Complemental strand, 25450565 - 25450495
Alignment:
Q  331 ctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgata 401  Q
    ||||||||||||||||||  |||| ||||||  | | || ||||||||| ||||||| |||||||||||||    
T  25450565 ctttccttccttacaaaatccatcaaccaatatattgaaggtatacacagttgggttgatgttttccgata 25450495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 30149406 - 30149352
Alignment:
Q  111 ggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagcta 165  Q
    ||||||||||||||||||  | ||||| ||| | |||||||||||||||||||||    
T  30149406 ggcttcatccaccattttattcttacataatccgttaatcatgatattgtagcta 30149352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 24886615 - 24886691
Alignment:
Q  89 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagcta 165  Q
    ||||||||||| |||| || ||||||||||| | |||||| |  || |||||| ||||||||| |||| ||||||||    
T  24886615 gcatttcttcatagagatttatggcttcatctatcattttaaccttgcaaaatccattaatcaagatagtgtagcta 24886691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 400
Target Start/End: Complemental strand, 22308 - 21931
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||||||||| ||||||||||||| | | ||||||| ||| |||||||| ||||||||| || |||||||||  || ||||| ||||||||||||||||    
T  22308 gatttgcacaatccatcgataagggaactataagttatcacatcaggaaaaatttgtttgtgatgcatttctttgaaaagtttcatggcttcatccacca 22209  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagctacggtcat---aagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| ||||||||||||||||||||||  |  |||    || ||   |||| | || |||||| ||||||||||| | |||||||      
T  22208 ttttaatcttacaaaatccattaatcatgatattgtagctctgaacattagcagtcacacccctatgagacatagtgttgaatatactctcggccttgtt 22109  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatcttt-ttccatcatcatatcgagcacatttttag 320  Q
    ||||||||| || || |||| |||||| || ||||||||| |||| ||||||||| || |||||  |||| || |||||||||| | | |||||||||||    
T  22108 cacttcatttaccagacaat-atccatccattaaagagctgtaagtaacaacatcagg-tttaatgctttgtttcatcatcatagctaacacatttttag 22011  T
Q  321 cttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgat 400  Q
    | |||| ||| ||||| |||||||||||  |||| ||||||  | |||| |||||||||| |||| | ||||||| ||||    
T  22010 cctcttttatgtttccgtccttacaaaatccatcaaccaatatactaaaggtatacacatctgggatgatgtttttcgat 21931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 25 - 404
Target Start/End: Original strand, 15062910 - 15063291
Alignment:
Q  25 gatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatccacca 124  Q
    ||||| ||||||||||| | ||||| ||||||||||||||| |  ||||| ||||||||   | |||||||||||||||| || ||||||||||| ||||    
T  15062910 gatttacacaaaccatcaacaagggaattgtaagttaccacatttggaaaaatttgtttacaatgcatttcttcaaagagcttcatggcttcatctacca 15063009  T
Q  125 ttttcattttacaaaattcattaatcatgatattgtagct---acggtcataagacaattccctttcagccatagttttgaatatactttgggccttgaa 221  Q
    |||| || ||||||||| |||||||||||||| |||||||   |  ||||  ||  | | |||||| |||||||   ||||||| ||| | |||||||      
T  15063010 ttttaatcttacaaaatccattaatcatgatactgtagctccaaacgtcaggagttactcccctttgagccataacgttgaataaactcttggccttgtt 15063109  T
Q  222 cacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacatttttagc 321  Q
    |||||  ||||| | ||||| |||||| || ||||||| |||||| |||||||||  ||||||  | ||||| |||||||| | | | ||||||||||||    
T  15063110 cacttgtttaactaagcaat-atccatccattaaagagttataagtaacaacatcaagttttacgttttttttcatcatcacagctaacacatttttagc 15063208  T
Q  322 ttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttttccgatatca 404  Q
    ||||   | ||||||||||||||||||  |||| | ||||  | |||||||||||||||| || |||||||| ||||||||||    
T  15063209 ttctctcacctttccttccttacaaaaaccatcaatcaatatactaaaagtatacacattcggattaatgttgtccgatatca 15063291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 392
Target Start/End: Original strand, 53625 - 53999
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||| ||||||| ||||||||||||||| |||||||  || |||||| || ||||||||   |||||||| ||||||| |||    
T  53625 tccccgatttacacaaaccatcaataagggaattgtaagttaccacatcaggaataatatgtttgtgatgcatttctatgaagagtttcatggctttatc 53724  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggcc 216  Q
    |||| |||| || ||||||||| ||||||||||||||||||||||| |  ||| ||    || | |||| | || |||||| ||||||||  | |  |||    
T  53725 cacctttttaatcttacaaaatccattaatcatgatattgtagctatgaacattagcagtcactcccctctgagacatagtgttgaatatcttcttagcc 53824  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    ||   |||||  ||||| |||||||| ||||| || |||||||| ||||| ||||||||  ||||| |   ||| || |||||||||| | | |||| ||    
T  53825 ttattcacttgtttaactaggcaata-tccatccattaaagagcaataagtaacaacattaggtttaatgccttgtttcatcatcatagcaaacacagtt 53923  T
Q  317 ttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgt 392  Q
    ||| ||||||  |||||||  |||||||||||  |||| ||||||  | |||||||| ||||||| || |||||||    
T  53924 ttaccttctttcatctttctgtccttacaaaatccatcaaccaatgtattaaaagtagacacattaggtttaatgt 53999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 54007 - 54116
Alignment:
Q  295 catcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttt 394  Q
    |||||||||||| | |||||||||||||| ||  | | ||||||||||||||||  |||| || |||  | |||| ||||||||||  || || ||||||    
T  54007 catcatcatatctaacacatttttagcttttttcagccttccttccttacaaaatccatcaactaatatattaaaggtatacacatccggtttgatgttt 54106  T
Q  395 tccgatatca 404  Q
    ||| ||||||    
T  54107 tccaatatca 54116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 4107 - 3777
Alignment:
Q  20 tcccggatttgcacaaaccatcgataagggtattgtaagttaccacgtcaggaaatatttgtttgagaggcatttcttcaaagagtttgatggcttcatc 119  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||| | |||||  |||| | ||  | |||||||||||||||| || |||||| ||||    
T  4107 tccccgatttacacaaaccatcgataagggaattgtaagttaccacattaggaataatttttctgcaatgcatttcttcaaagagattcatggctgcatc 4008  T
Q  120 caccattttcattttacaaaattcattaatcatgatattgtagctacggtcataaga---caattccctttcagccatagttttgaatatactttgggcc 216  Q
       |||||| || ||||||||  ||||||||| ||||||||| ||  |   || ||    || | |||  | ||||||| | ||||||||||| |  |||    
T  4007 ggtcattttaatcttacaaaacccattaatcaagatattgtaactctgaatatcaggattcactcccccctgagccatattgttgaatatactcttagcc 3908  T
Q  217 ttgaacacttcattaacaaggcaataatccattcactaaagagctataagcaacaacatcgggttttaaatctttttccatcatcatatcgagcacattt 316  Q
    |||  |||||| |||||||||||||| ||||| || |||||||||||||| |||||| |  ||||| ||| |||||| |||||||  | | | |||||||    
T  3907 ttgttcacttctttaacaaggcaata-tccatccattaaagagctataagtaacaacgttaggtttgaaaccttttttcatcatcgcagcaaacacattt 3809  T
Q  317 ttagcttcttctatctttccttccttacaaaa 348  Q
    |||||||||| ||  |||||||||||||||||    
T  3808 ttagcttcttttacttttccttccttacaaaa 3777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 395
Target Start/End: Original strand, 1526 - 1626
Alignment:
Q  295 catcatcatatcgagcacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgttt 394  Q
    |||||||||| | | |||||||||||||||||   | ||||||||||||||||| ||||| ||||||  | |||||||||||||||  ||||| ||||||    
T  1526 catcatcatagctatcacatttttagcttctttcgtgtttccttccttacaaaaagcatcgaccaatatattaaaagtatacacatcagggttgatgttt 1625  T
Q  395 t 395  Q
    |    
T  1626 t 1626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 8673 - 8588
Alignment:
Q  310 cacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    |||||||||||||||||  || |||||||||||||| |  ||||| ||||||  | |||||||||| ||||||||||| |||||||    
T  8673 cacatttttagcttctttcatttttccttccttacagagagcatcaaccaatatattaaaagtataaacatttgggttgatgtttt 8588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 5852 - 5789
Alignment:
Q  332 tttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    ||||||||||||||||  ||||| ||||||  | |||||||||||||||||||||| |||||||    
T  5852 tttccttccttacaaagagcatcaaccaatatattaaaagtatacacatttgggttgatgtttt 5789  T

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Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 395
Target Start/End: Original strand, 43630 - 43693
Alignment:
Q  332 tttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    ||||||||||||||||  ||||| ||||||  | |||||||||||||||||||||| |||||||    
T  43630 tttccttccttacaaagagcatcaaccaatatattaaaagtatacacatttgggttgatgtttt 43693  T

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Target: scaffold0051; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 43383 - 43458
Alignment:
Q  89 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgatattgtagct 164  Q
    ||||||| | ||||||  ||| ||||||||  |||||||| || ||||||||| |||||||||||||||| |||||    
T  43383 gcatttcattaaagagactgaaggcttcattgaccattttaatcttacaaaatccattaatcatgatattatagct 43458  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 121792 - 121877
Alignment:
Q  310 cacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    |||||||||||||||||  |||||||||||||| ||||  ||||| | ||||   ||||||||||| | ||||||||| |||||||    
T  121792 cacatttttagcttctttgatctttccttccttgcaaagagcatcaatcaatatggtaaaagtataaatatttgggttgatgtttt 121877  T

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Target: scaffold0014; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 140199 - 140132
Alignment:
Q  89 gcatttcttcaaagagtttgatggcttcatccaccattttcattttacaaaattcattaatcatgata 156  Q
    ||||||| ||||||||  | | ||||||||| |||||||| || ||||||||| ||||||||||||||    
T  140199 gcatttcatcaaagagactcaaggcttcatcaaccattttaatcttacaaaatccattaatcatgata 140132  T

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Target: scaffold0014; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 105083 - 105144
Alignment:
Q  334 tccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    ||||||||||||||  ||||| ||||||  | ||||||||||||||| |||||| |||||||    
T  105083 tccttccttacaaagagcatcaaccaatatattaaaagtatacacatctgggttgatgtttt 105144  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 395
Target Start/End: Original strand, 126444 - 126529
Alignment:
Q  310 cacatttttagcttcttctatctttccttccttacaaaaggcatctaccaatccagtaaaagtatacacatttgggttaatgtttt 395  Q
    |||| ||||||||||||  ||||||||||||||||| |  ||||| |||| |  | |||||||||| |||| |||||| |||||||    
T  126444 cacacttttagcttctttcatctttccttccttacatagagcatcaaccattatattaaaagtataaacatctgggttgatgtttt 126529  T

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