View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16076_low_10 (Length: 250)
Name: NF16076_low_10
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16076_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34955659 - 34955418
Alignment:
| Q |
1 |
atgaaatatttaagttatgtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34955659 |
atgaaatatttaggttatgtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaa |
34955560 |
T |
|
| Q |
101 |
aacaactactaaaaaacaagggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34955559 |
aacaactactaaaaaacaagggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaa |
34955460 |
T |
|
| Q |
201 |
catgattgattttagaaagaattcaggtcttcttcctatgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34955459 |
catgattgattttagaaagaattcaggtcttcttcttatgct |
34955418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 35034815 - 35034581
Alignment:
| Q |
1 |
atgaaatatttaagttatgtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaa |
100 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| | | |
|
|
| T |
35034815 |
atgaaatatttgggttatatagttcttggttacattataattctacatattataggtgtatttggggtgtctctttaccttgcaatgattcctagtgcta |
35034716 |
T |
|
| Q |
101 |
aacaactactaaaaaacaagggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaa |
200 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
35034715 |
aacaagtactagaaaacaagggtctaaaaatgttcacattttctctttttactatagtttcaacattttcaagttgtggatttattccaacaaatgaaaa |
35034616 |
T |
|
| Q |
201 |
catgattgattttagaaagaattcaggtcttcttc |
235 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |
|
|
| T |
35034615 |
catggttgtttttagaaagaattcaggtcttcttc |
35034581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 34974070 - 34973829
Alignment:
| Q |
1 |
atgaaatatttaagttatgtagttattggttacattttatttctacatgttataggtgtaattggggtgtctctttaccttacaattattcctagtacaa |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||| ||||| || | || ||||||||||||||||||||||| |||||||| |||||||||||||| | | |
|
|
| T |
34974070 |
atgaaatatttgggttatgtagtttttgcttactttttaattattcacattataggtgtaattggggtgtctatttaccttgcaattattcctagtgcta |
34973971 |
T |
|
| Q |
101 |
aacaactactaaaaaacaagggtctaaaaatgttgacattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaa |
200 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
34973970 |
aacaaatacttaaaaacaagggtctaaaaatgttcacattttctgtttttactatagtttcaacatttgcaagttgtggatttgttccaacaaatgaaaa |
34973871 |
T |
|
| Q |
201 |
catgattgattttagaaagaattcaggtcttcttcctatgct |
242 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
34973870 |
catggttgtttttagaaagaattcaggtcttcttcttatgct |
34973829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 35000601 - 35000502
Alignment:
| Q |
136 |
acattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
235 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| ||| ||||||| ||| ||||| ||||| |||||||| | ||| | ||||||||||| ||||||| |
|
|
| T |
35000601 |
acattttctttatttaccatagtttcaacatttgcaacatgtggttatgtaccaaccaatgagaacatgatagttttcaagaagaattcaggacttcttc |
35000502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 235
Target Start/End: Complemental strand, 35046962 - 35046863
Alignment:
| Q |
136 |
acattttctgtttttactatagtttcatcattttcaagttgtggttttgttccaacaaatgaaaacatgattgattttagaaagaattcaggtcttcttc |
235 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||| |||||||||||| | | || || ||||| |||||||| | ||| | ||||||||||| ||||||| |
|
|
| T |
35046962 |
acattttctttatttacaatagtttcaacatttgcaagttgtggttatatccctaccaatgagaacatgatggttttcaagaagaattcaggacttcttc |
35046863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University