View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16076_low_2 (Length: 426)
Name: NF16076_low_2
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16076_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 51540211 - 51539814
Alignment:
| Q |
19 |
atgcctgaccccaccattccctgggatcaaataaatcaaaaattcgaattctaaagtttctatattacgacatgagcttaacagatagttttgaaaagga |
118 |
Q |
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| T |
51540211 |
atgcctgaccccaccattccctgggatcaaataaatcaaaaatttgaattctaaagtttctatattacgacatgagcttaacagatagttttgaaaagga |
51540112 |
T |
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| Q |
119 |
tttggattgctgccgtcacaattcactcactcaacacatgggtgaccgttgaatcaagatcagtcgatgcacaaagcaaacaaatttgatgttttttaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51540111 |
tttggattgctgccgtcacaattcactcactcaacacatgggtggccgttgaatcaagatcagtcgatgcacaaagcaaacaaatttgatgttttttaaa |
51540012 |
T |
|
| Q |
219 |
aacactaaaataccgaacttgaaatatgactggccaattttgattcaacgacctcaatgtgctgactaagcaattgcgtgaaannnnnnnactgtagcaa |
318 |
Q |
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| T |
51540011 |
aacactaaaataccgaacttgaattatgactggccaattttgatccaacgacctcaatatgctgactaagcaattgcgtgaaa-ttttttactgtagcaa |
51539913 |
T |
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| Q |
319 |
atttggatcctttcgaaaatattctacaagatgtat-tatgtctcgaaaagagcattcttacagcatatattaaacacattatttctagctttcctttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51539912 |
atttggatcctttcgaaaatattctacaagatgtatctatgtctcgaaaagagcattcttacagcatatattaaacacattatttctagctttcctttg |
51539814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 245
Target Start/End: Complemental strand, 7748032 - 7747997
Alignment:
| Q |
210 |
ttttttaaaaacactaaaataccgaacttgaaatat |
245 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
7748032 |
ttttttaaaaactctaaaataccgaacttgaaatat |
7747997 |
T |
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