View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16076_low_7 (Length: 286)
Name: NF16076_low_7
Description: NF16076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16076_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 21547372 - 21547496
Alignment:
| Q |
18 |
gatgataatatctagagtcttttctctatttgacagccaaggagaaaaacttaatcacattcaaattgttctttgggatgctttaatattaccaaattta |
117 |
Q |
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| T |
21547372 |
gatgataatatctagagtcttttctctatttgacagccaaggagaaaaacttaatcacattcaaattgttctttgggatgctttaatattaccaaattta |
21547471 |
T |
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| Q |
118 |
ctgaaaacataatattcaatattat |
142 |
Q |
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| T |
21547472 |
ctgaaaacataatattcaatattat |
21547496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 21547587 - 21547631
Alignment:
| Q |
234 |
ggcgattagcatgaatagagaaatacacaaaaaatctgagaatta |
278 |
Q |
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| T |
21547587 |
ggcgattggcatgaatagagaaatacacaaaaaatctgagaatta |
21547631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 39741498 - 39741424
Alignment:
| Q |
62 |
aaaaacttaatcacattcaaattgttctttgggatgctttaatattaccaaatttactgaaaacataatattcaa |
136 |
Q |
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| T |
39741498 |
aaaaaattaatcacactcaaattgttctttgggatggtttaatattaccaaatttactgaaaatataatattcaa |
39741424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 6897962 - 6897888
Alignment:
| Q |
62 |
aaaaacttaatcacattcaaattgttctttgggatgctttaatattaccaaatttactgaaaacataatattcaa |
136 |
Q |
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| T |
6897962 |
aaaaaattaatcacactcaaattgttctttgggatggtttaatattaccaaatttactgaaaatataatattcaa |
6897888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 33619042 - 33618970
Alignment:
| Q |
63 |
aaaacttaatcacattcaaattgttctttgggatgctttaatattaccaaatttactgaaaacataatattca |
135 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
33619042 |
aaaaattaatctcattcaaattgttctttgggatgctttaatattaccaaatttattgaaaatataatattca |
33618970 |
T |
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